Gene : Glyma.06G001100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  11
Name:  ? Glyma.06G001100 Secondary Identifier:  ? PAC:30554047
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G001100 0.5kb upstream 0.5kb upstream 6650 true Chr06: 116892-123541 Glycine max
Glyma.06G001100 0.5kb upstream 0.5kb upstream 500 false Chr06: 123042-123541 Glycine max
Glyma.06G001100 0.5kb downstream 0.5kb downstream 6650 true Chr06: 116392-123041 Glycine max
Glyma.06G001100 0.5kb downstream 0.5kb downstream 500 false Chr06: 116392-116891 Glycine max
Glyma.06G001100 1.0kb upstream 1.0kb upstream 7150 true Chr06: 116892-124041 Glycine max
Glyma.06G001100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 123042-124041 Glycine max
Glyma.06G001100 1.0kb downstream 1.0kb downstream 7150 true Chr06: 115892-123041 Glycine max
Glyma.06G001100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 115892-116891 Glycine max
Glyma.06G001100 2.0kb upstream 2.0kb upstream 8150 true Chr06: 116892-125041 Glycine max
Glyma.06G001100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 123042-125041 Glycine max
Glyma.06G001100 2.0kb downstream 2.0kb downstream 8150 true Chr06: 114892-123041 Glycine max
Glyma.06G001100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 114892-116891 Glycine max
Glyma.06G001100 5.0kb upstream 5.0kb upstream 11150 true Chr06: 116892-128041 Glycine max
Glyma.06G001100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 123042-128041 Glycine max
Glyma.06G001100 5.0kb downstream 5.0kb downstream 11150 true Chr06: 111892-123041 Glycine max
Glyma.06G001100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 111892-116891 Glycine max
Glyma.06G001100 10.0kb upstream 10.0kb upstream 16150 true Chr06: 116892-133041 Glycine max
Glyma.06G001100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 123042-133041 Glycine max
Glyma.06G001100 10.0kb downstream 10.0kb downstream 16150 true Chr06: 106892-123041 Glycine max
Glyma.06G001100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 106892-116891 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309054 5265 Fabidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.19325 0.0 39.4299   High
cufflinks 4.16916 0.0 14.9936    
cufflinks 2.03845 0.0 10.0001    
cufflinks 2.83738 0.0 13.4514    
cufflinks 1.31578 0.0 7.10061    
cufflinks 0.448804 0.0 1.96125   Low
cufflinks 2.4048 0.0 9.70528    
cufflinks 1.64806 0.0 6.33719    
cufflinks 1.50942 0.0 4.58209    
cufflinks 0.688        
cufflinks 0.156        
cufflinks 0.914        
cufflinks 0.172        
cufflinks 0.158        
cufflinks 0.504        
cufflinks 5.603       High
cufflinks 0.119       Low
cufflinks 0.912        
cufflinks 1.574        
cufflinks 7.663     High High
cufflinks 0.198        
cufflinks 6.452       High
cufflinks 3.319        
cufflinks 0.171        
cufflinks 6.851       High
cufflinks 0.117       Low

0 Strain