Gene : Glyma.06G001300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22536 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN Genomic Order:  13
Name:  ? Glyma.06G001300 Secondary Identifier:  ? PAC:30549966
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G001300 0.5kb upstream 0.5kb upstream 10468 true Chr06: 126501-136968 Glycine max
Glyma.06G001300 0.5kb upstream 0.5kb upstream 500 false Chr06: 126501-127000 Glycine max
Glyma.06G001300 0.5kb downstream 0.5kb downstream 10468 true Chr06: 127001-137468 Glycine max
Glyma.06G001300 0.5kb downstream 0.5kb downstream 500 false Chr06: 136969-137468 Glycine max
Glyma.06G001300 1.0kb upstream 1.0kb upstream 10968 true Chr06: 126001-136968 Glycine max
Glyma.06G001300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 126001-127000 Glycine max
Glyma.06G001300 1.0kb downstream 1.0kb downstream 10968 true Chr06: 127001-137968 Glycine max
Glyma.06G001300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 136969-137968 Glycine max
Glyma.06G001300 2.0kb upstream 2.0kb upstream 11968 true Chr06: 125001-136968 Glycine max
Glyma.06G001300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 125001-127000 Glycine max
Glyma.06G001300 2.0kb downstream 2.0kb downstream 11968 true Chr06: 127001-138968 Glycine max
Glyma.06G001300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 136969-138968 Glycine max
Glyma.06G001300 5.0kb upstream 5.0kb upstream 14968 true Chr06: 122001-136968 Glycine max
Glyma.06G001300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 122001-127000 Glycine max
Glyma.06G001300 5.0kb downstream 5.0kb downstream 14968 true Chr06: 127001-141968 Glycine max
Glyma.06G001300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 136969-141968 Glycine max
Glyma.06G001300 10.0kb upstream 10.0kb upstream 19968 true Chr06: 117001-136968 Glycine max
Glyma.06G001300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 117001-127000 Glycine max
Glyma.06G001300 10.0kb downstream 10.0kb downstream 19968 true Chr06: 127001-146968 Glycine max
Glyma.06G001300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 136969-146968 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250327 5265 Fabidae View MSA
124074053 5270 Rosid View MSA
123743720 5271 Pentapetalae View MSA
122789289 5272 Eudicot View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.99188 0.0 43.7384   High
cufflinks 2.89871 0.0 30.9472    
cufflinks 3.02015 0.0 33.4787    
cufflinks 4.27317 0.0 45.5616    
cufflinks 2.3229 0.0 44.3145   Low
cufflinks 3.49416 0.0 34.0157    
cufflinks 3.27851 0.0 55.5811    
cufflinks 4.26733 0.0 42.5321    
cufflinks 3.615 0.0 42.5009    
cufflinks 0.113       Low
cufflinks 0.164        
cufflinks 0.239        
cufflinks 0.187        
cufflinks 0.14        
cufflinks 0.203        
cufflinks 0.228        
cufflinks 0.087       Low
cufflinks 0.222        
cufflinks 0.171        
cufflinks 0.294       High
cufflinks 0.156        
cufflinks 0.26       High
cufflinks 0.181        
cufflinks 0.219        
cufflinks 0.277       High
cufflinks 0.14        

0 Strain