Gene : Glyma.06G001700 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22812 - CHROMOBOX PROTEIN Genomic Order:  17
Name:  ? Glyma.06G001700 Secondary Identifier:  ? PAC:30553870
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G001700 0.5kb upstream 0.5kb upstream 5482 true Chr06: 162671-168152 Glycine max
Glyma.06G001700 0.5kb upstream 0.5kb upstream 500 false Chr06: 162671-163170 Glycine max
Glyma.06G001700 0.5kb downstream 0.5kb downstream 5482 true Chr06: 163171-168652 Glycine max
Glyma.06G001700 0.5kb downstream 0.5kb downstream 500 false Chr06: 168153-168652 Glycine max
Glyma.06G001700 1.0kb upstream 1.0kb upstream 5982 true Chr06: 162171-168152 Glycine max
Glyma.06G001700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 162171-163170 Glycine max
Glyma.06G001700 1.0kb downstream 1.0kb downstream 5982 true Chr06: 163171-169152 Glycine max
Glyma.06G001700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 168153-169152 Glycine max
Glyma.06G001700 2.0kb upstream 2.0kb upstream 6982 true Chr06: 161171-168152 Glycine max
Glyma.06G001700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 161171-163170 Glycine max
Glyma.06G001700 2.0kb downstream 2.0kb downstream 6982 true Chr06: 163171-170152 Glycine max
Glyma.06G001700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 168153-170152 Glycine max
Glyma.06G001700 5.0kb upstream 5.0kb upstream 9982 true Chr06: 158171-168152 Glycine max
Glyma.06G001700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 158171-163170 Glycine max
Glyma.06G001700 5.0kb downstream 5.0kb downstream 9982 true Chr06: 163171-173152 Glycine max
Glyma.06G001700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 168153-173152 Glycine max
Glyma.06G001700 10.0kb upstream 10.0kb upstream 14982 true Chr06: 153171-168152 Glycine max
Glyma.06G001700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 153171-163170 Glycine max
Glyma.06G001700 10.0kb downstream 10.0kb downstream 14982 true Chr06: 163171-178152 Glycine max
Glyma.06G001700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 168153-178152 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250052 5265 Fabidae View MSA
124041882 5270 Rosid View MSA
123743602 5271 Pentapetalae View MSA
122791541 5272 Eudicot View MSA
122044379 5273 Angiosperm View MSA
121347782 5274 Embryophyte View MSA
123380626 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.92035 0.0 9.53153   Low
cufflinks 14.5741 0.0 39.4454   High
cufflinks 3.29479 0.0 10.5292   Low
cufflinks 7.40617 0.0 21.2155    
cufflinks 9.14789 0.0 25.616    
cufflinks 7.6792 0.0 21.9369    
cufflinks 8.00649 0.0 22.77    
cufflinks 7.92112 0.0 22.5126    
cufflinks 7.80771 0.0 22.258    
cufflinks 2.297        
cufflinks 0.273       Low
cufflinks 1.5        
cufflinks 2.979       High
cufflinks 4.285       High
cufflinks 0.472       Low
cufflinks 1.486        
cufflinks 0.751        
cufflinks 2.2        
cufflinks 3.559       High
cufflinks 1.063        
cufflinks 0.539        
cufflinks 1.192        
cufflinks 2.315        
cufflinks 0.421       Low
cufflinks 1.221        
cufflinks 0.564        

0 Strain