Gene : Glyma.06G002800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  28
Name:  ? Glyma.06G002800 Secondary Identifier:  ? PAC:30550830
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G002800 0.5kb upstream 0.5kb upstream 3589 true Chr06: 228789-232377 Glycine max
Glyma.06G002800 0.5kb upstream 0.5kb upstream 500 false Chr06: 228789-229288 Glycine max
Glyma.06G002800 0.5kb downstream 0.5kb downstream 3589 true Chr06: 229289-232877 Glycine max
Glyma.06G002800 0.5kb downstream 0.5kb downstream 500 false Chr06: 232378-232877 Glycine max
Glyma.06G002800 1.0kb upstream 1.0kb upstream 4089 true Chr06: 228289-232377 Glycine max
Glyma.06G002800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 228289-229288 Glycine max
Glyma.06G002800 1.0kb downstream 1.0kb downstream 4089 true Chr06: 229289-233377 Glycine max
Glyma.06G002800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 232378-233377 Glycine max
Glyma.06G002800 2.0kb upstream 2.0kb upstream 5089 true Chr06: 227289-232377 Glycine max
Glyma.06G002800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 227289-229288 Glycine max
Glyma.06G002800 2.0kb downstream 2.0kb downstream 5089 true Chr06: 229289-234377 Glycine max
Glyma.06G002800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 232378-234377 Glycine max
Glyma.06G002800 5.0kb upstream 5.0kb upstream 8089 true Chr06: 224289-232377 Glycine max
Glyma.06G002800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 224289-229288 Glycine max
Glyma.06G002800 5.0kb downstream 5.0kb downstream 8089 true Chr06: 229289-237377 Glycine max
Glyma.06G002800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 232378-237377 Glycine max
Glyma.06G002800 10.0kb upstream 10.0kb upstream 13089 true Chr06: 219289-232377 Glycine max
Glyma.06G002800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 219289-229288 Glycine max
Glyma.06G002800 10.0kb downstream 10.0kb downstream 13089 true Chr06: 229289-242377 Glycine max
Glyma.06G002800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 232378-242377 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299446 5265 Fabidae View MSA
124061489 5270 Rosid View MSA
123739858 5271 Pentapetalae View MSA
122789905 5272 Eudicot View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.5074 0.0 24.956    
cufflinks 2.74345 0.0 17.5655   Low
cufflinks 3.8728 0.0 21.9747    
cufflinks 3.71278 0.0 19.5834    
cufflinks 3.51262 0.0 19.2083    
cufflinks 3.55732 0.0 21.3795    
cufflinks 3.59897 0.0 19.2081    
cufflinks 2.90743 0.0 18.5918   Low
cufflinks 5.4079 0.0 25.448   High
cufflinks 0.259       Low
cufflinks 0.282       Low
cufflinks 0.474        
cufflinks 0.421        
cufflinks 0.543       High
cufflinks 0.416        
cufflinks 0.402        
cufflinks 0.252       Low
cufflinks 0.489        
cufflinks 0.469        
cufflinks 0.449        
cufflinks 0.397        
cufflinks 0.446        
cufflinks 0.299        
cufflinks 0.314        
cufflinks 0.469        
cufflinks 0.253       Low

0 Strain