Gene : Glyma.06G030600 G. max Wm82.a2.v1
Defline:  (1 of 2) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  306
Name:  ? Glyma.06G030600 Secondary Identifier:  ? PAC:30550229
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARGSYNBSUB-PWY Glycine max pathologic  
Gmax ARGSYN-PWY Glycine max pathologic  
Gmax CITRULBIO-PWY Glycine max pathologic  
Gmax CITRULLINE-DEG-PWY Glycine max pathologic  
Gmax PWY-4984 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G030600 0.5kb upstream 0.5kb upstream 5014 true Chr06: 2405877-2410890 Glycine max
Glyma.06G030600 0.5kb upstream 0.5kb upstream 500 false Chr06: 2405877-2406376 Glycine max
Glyma.06G030600 0.5kb downstream 0.5kb downstream 5014 true Chr06: 2406377-2411390 Glycine max
Glyma.06G030600 0.5kb downstream 0.5kb downstream 500 false Chr06: 2410891-2411390 Glycine max
Glyma.06G030600 1.0kb upstream 1.0kb upstream 5514 true Chr06: 2405377-2410890 Glycine max
Glyma.06G030600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 2405377-2406376 Glycine max
Glyma.06G030600 1.0kb downstream 1.0kb downstream 5514 true Chr06: 2406377-2411890 Glycine max
Glyma.06G030600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 2410891-2411890 Glycine max
Glyma.06G030600 2.0kb upstream 2.0kb upstream 6514 true Chr06: 2404377-2410890 Glycine max
Glyma.06G030600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 2404377-2406376 Glycine max
Glyma.06G030600 2.0kb downstream 2.0kb downstream 6514 true Chr06: 2406377-2412890 Glycine max
Glyma.06G030600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 2410891-2412890 Glycine max
Glyma.06G030600 5.0kb upstream 5.0kb upstream 9514 true Chr06: 2401377-2410890 Glycine max
Glyma.06G030600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 2401377-2406376 Glycine max
Glyma.06G030600 5.0kb downstream 5.0kb downstream 9514 true Chr06: 2406377-2415890 Glycine max
Glyma.06G030600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 2410891-2415890 Glycine max
Glyma.06G030600 10.0kb upstream 10.0kb upstream 14514 true Chr06: 2396377-2410890 Glycine max
Glyma.06G030600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 2396377-2406376 Glycine max
Glyma.06G030600 10.0kb downstream 10.0kb downstream 14514 true Chr06: 2406377-2420890 Glycine max
Glyma.06G030600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 2410891-2420890 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306877 5265 Fabidae View MSA
124068629 5270 Rosid View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.1077 0.0 30.4951    
cufflinks 18.2011 0.0 48.7506    
cufflinks 4.99046 0.0 14.9866   Low
cufflinks 19.2225 0.0 51.3975    
cufflinks 14.8267 0.0 39.9792    
cufflinks 9.09459 0.0 25.3758    
cufflinks 33.0652 0.0 88.7186 High High
cufflinks 14.7118 0.0 39.722    
cufflinks 12.444 0.0 33.9009    
cufflinks 4.3        
cufflinks 0.836       Low
cufflinks 2.886        
cufflinks 4.098        
cufflinks 5.168       High
cufflinks 1.32       Low
cufflinks 4.67        
cufflinks 1.432       Low
cufflinks 3.056        
cufflinks 5.432       High
cufflinks 3.756        
cufflinks 1.388       Low
cufflinks 4.137        
cufflinks 4.757        
cufflinks 1.158       Low
cufflinks 4.273        
cufflinks 1.465        

0 Strain