Gene : Glyma.06G029000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21091:SF18 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I Genomic Order:  290
Name:  ? Glyma.06G029000 Secondary Identifier:  ? PAC:30551614
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G029000 0.5kb upstream 0.5kb upstream 8630 true Chr06: 2266786-2275415 Glycine max
Glyma.06G029000 0.5kb upstream 0.5kb upstream 500 false Chr06: 2274916-2275415 Glycine max
Glyma.06G029000 0.5kb downstream 0.5kb downstream 8630 true Chr06: 2266286-2274915 Glycine max
Glyma.06G029000 0.5kb downstream 0.5kb downstream 500 false Chr06: 2266286-2266785 Glycine max
Glyma.06G029000 1.0kb upstream 1.0kb upstream 9130 true Chr06: 2266786-2275915 Glycine max
Glyma.06G029000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 2274916-2275915 Glycine max
Glyma.06G029000 1.0kb downstream 1.0kb downstream 9130 true Chr06: 2265786-2274915 Glycine max
Glyma.06G029000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 2265786-2266785 Glycine max
Glyma.06G029000 2.0kb upstream 2.0kb upstream 10130 true Chr06: 2266786-2276915 Glycine max
Glyma.06G029000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 2274916-2276915 Glycine max
Glyma.06G029000 2.0kb downstream 2.0kb downstream 10130 true Chr06: 2264786-2274915 Glycine max
Glyma.06G029000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 2264786-2266785 Glycine max
Glyma.06G029000 5.0kb upstream 5.0kb upstream 13130 true Chr06: 2266786-2279915 Glycine max
Glyma.06G029000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 2274916-2279915 Glycine max
Glyma.06G029000 5.0kb downstream 5.0kb downstream 13130 true Chr06: 2261786-2274915 Glycine max
Glyma.06G029000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 2261786-2266785 Glycine max
Glyma.06G029000 10.0kb upstream 10.0kb upstream 18130 true Chr06: 2266786-2284915 Glycine max
Glyma.06G029000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 2274916-2284915 Glycine max
Glyma.06G029000 10.0kb downstream 10.0kb downstream 18130 true Chr06: 2256786-2274915 Glycine max
Glyma.06G029000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 2256786-2266785 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307010 5265 Fabidae View MSA
124062180 5270 Rosid View MSA
123741052 5271 Pentapetalae View MSA
122786797 5272 Eudicot View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.23418 0.0 42.2509   High
cufflinks 5.15356 0.0 32.6708    
cufflinks 4.22187 0.0 29.6373    
cufflinks 5.16458 0.0 32.6544    
cufflinks 5.60722 0.0 30.258    
cufflinks 4.06707 0.0 21.1402   Low
cufflinks 4.35988 0.0 31.1093    
cufflinks 4.35201 0.0 29.7454    
cufflinks 4.65997 0.0 27.8524    
cufflinks 0.141        
cufflinks 0.118       Low
cufflinks 0.185        
cufflinks 0.168        
cufflinks 0.185        
cufflinks 0.409       High
cufflinks 0.228        
cufflinks 0.096       Low
cufflinks 0.2        
cufflinks 0.216        
cufflinks 0.268       High
cufflinks 0.163        
cufflinks 0.255        
cufflinks 0.2        
cufflinks 0.115       Low
cufflinks 0.267        
cufflinks 0.098       Low

0 Strain