Gene : Glyma.06G019400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  194
Name:  ? Glyma.06G019400 Secondary Identifier:  ? PAC:30553209
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G019400 0.5kb upstream 0.5kb upstream 4389 true Chr06: 1472249-1476637 Glycine max
Glyma.06G019400 0.5kb upstream 0.5kb upstream 500 false Chr06: 1476138-1476637 Glycine max
Glyma.06G019400 0.5kb downstream 0.5kb downstream 4389 true Chr06: 1471749-1476137 Glycine max
Glyma.06G019400 0.5kb downstream 0.5kb downstream 500 false Chr06: 1471749-1472248 Glycine max
Glyma.06G019400 1.0kb upstream 1.0kb upstream 4889 true Chr06: 1472249-1477137 Glycine max
Glyma.06G019400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 1476138-1477137 Glycine max
Glyma.06G019400 1.0kb downstream 1.0kb downstream 4889 true Chr06: 1471249-1476137 Glycine max
Glyma.06G019400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 1471249-1472248 Glycine max
Glyma.06G019400 2.0kb upstream 2.0kb upstream 5889 true Chr06: 1472249-1478137 Glycine max
Glyma.06G019400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 1476138-1478137 Glycine max
Glyma.06G019400 2.0kb downstream 2.0kb downstream 5889 true Chr06: 1470249-1476137 Glycine max
Glyma.06G019400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 1470249-1472248 Glycine max
Glyma.06G019400 5.0kb upstream 5.0kb upstream 8889 true Chr06: 1472249-1481137 Glycine max
Glyma.06G019400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 1476138-1481137 Glycine max
Glyma.06G019400 5.0kb downstream 5.0kb downstream 8889 true Chr06: 1467249-1476137 Glycine max
Glyma.06G019400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 1467249-1472248 Glycine max
Glyma.06G019400 10.0kb upstream 10.0kb upstream 13889 true Chr06: 1472249-1486137 Glycine max
Glyma.06G019400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 1476138-1486137 Glycine max
Glyma.06G019400 10.0kb downstream 10.0kb downstream 13889 true Chr06: 1462249-1476137 Glycine max
Glyma.06G019400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 1462249-1472248 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310077 5265 Fabidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 113.365 0.0 408.82 High High
cufflinks 23.2354 0.0 63.9218 High  
cufflinks 44.5814 0.0 132.419 High  
cufflinks 23.726 0.0 65.4434 High  
cufflinks 6.8217 0.0 18.363    
cufflinks 6.9838 0.0 18.7895    
cufflinks 10.6837 0.0 28.503    
cufflinks 19.6623 0.0 53.4681    
cufflinks 6.22079 0.0 16.8409   Low
cufflinks 15.726     High  
cufflinks 4.746       Low
cufflinks 32.224     High  
cufflinks 5.965        
cufflinks 2.629       Low
cufflinks 4.835       Low
cufflinks 55.498     High High
cufflinks 4.701       Low
cufflinks 21.703     High  
cufflinks 23.019     High  
cufflinks 43.23     High High
cufflinks 6.102     High  
cufflinks 48.605     High High
cufflinks 44.092     High High
cufflinks 6.146     High  
cufflinks 48.16     High High
cufflinks 6.941     High  

0 Strain