Gene : Glyma.06G069600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  696
Name:  ? Glyma.06G069600 Secondary Identifier:  ? PAC:30552329
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1001 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G069600 0.5kb upstream 0.5kb upstream 6550 true Chr06: 5338316-5344865 Glycine max
Glyma.06G069600 0.5kb upstream 0.5kb upstream 500 false Chr06: 5344366-5344865 Glycine max
Glyma.06G069600 0.5kb downstream 0.5kb downstream 6550 true Chr06: 5337816-5344365 Glycine max
Glyma.06G069600 0.5kb downstream 0.5kb downstream 500 false Chr06: 5337816-5338315 Glycine max
Glyma.06G069600 1.0kb upstream 1.0kb upstream 7050 true Chr06: 5338316-5345365 Glycine max
Glyma.06G069600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 5344366-5345365 Glycine max
Glyma.06G069600 1.0kb downstream 1.0kb downstream 7050 true Chr06: 5337316-5344365 Glycine max
Glyma.06G069600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 5337316-5338315 Glycine max
Glyma.06G069600 2.0kb upstream 2.0kb upstream 8050 true Chr06: 5338316-5346365 Glycine max
Glyma.06G069600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 5344366-5346365 Glycine max
Glyma.06G069600 2.0kb downstream 2.0kb downstream 8050 true Chr06: 5336316-5344365 Glycine max
Glyma.06G069600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 5336316-5338315 Glycine max
Glyma.06G069600 5.0kb upstream 5.0kb upstream 11050 true Chr06: 5338316-5349365 Glycine max
Glyma.06G069600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 5344366-5349365 Glycine max
Glyma.06G069600 5.0kb downstream 5.0kb downstream 11050 true Chr06: 5333316-5344365 Glycine max
Glyma.06G069600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 5333316-5338315 Glycine max
Glyma.06G069600 10.0kb upstream 10.0kb upstream 16050 true Chr06: 5338316-5354365 Glycine max
Glyma.06G069600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 5344366-5354365 Glycine max
Glyma.06G069600 10.0kb downstream 10.0kb downstream 16050 true Chr06: 5328316-5344365 Glycine max
Glyma.06G069600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 5328316-5338315 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304699 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.244 0.0 101.064 High  
cufflinks 39.2613 0.0 122.516 High  
cufflinks 18.2864 0.0 59.341   Low
cufflinks 82.2345 0.0 476.915 High  
cufflinks 79.3651 0.0 330.175 High  
cufflinks 89.3057 0.0 400.916 High High
cufflinks 25.4346 0.0 88.403 High Low
cufflinks 78.2928 0.0 328.934 High  
cufflinks 49.5725 0.0 168.513 High  
cufflinks 42.4     High High
cufflinks 2.59       Low
cufflinks 12.319     High  
cufflinks 39.815     High High
cufflinks 29.142     High  
cufflinks 12.25     High  
cufflinks 22.351     High  
cufflinks 23.459     High  
cufflinks 21.444     High  
cufflinks 19.076     High  
cufflinks 18.172     High  
cufflinks 4.617       Low
cufflinks 19.535     High  
cufflinks 20.025     High  
cufflinks 2.113       Low
cufflinks 16.057     High  
cufflinks 14.926     High  

0 Strain