Gene : Glyma.06G061700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21145:SF1 - CHORISMATE MUTASE 2 Genomic Order:  617
Name:  ? Glyma.06G061700 Secondary Identifier:  ? PAC:30552688
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3461 Glycine max pathologic  
Gmax PWY-3462 Glycine max pathologic  
Gmax PWY-3481 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G061700 0.5kb upstream 0.5kb upstream 2494 true Chr06: 4644103-4646596 Glycine max
Glyma.06G061700 0.5kb upstream 0.5kb upstream 500 false Chr06: 4646097-4646596 Glycine max
Glyma.06G061700 0.5kb downstream 0.5kb downstream 2494 true Chr06: 4643603-4646096 Glycine max
Glyma.06G061700 0.5kb downstream 0.5kb downstream 500 false Chr06: 4643603-4644102 Glycine max
Glyma.06G061700 1.0kb upstream 1.0kb upstream 2994 true Chr06: 4644103-4647096 Glycine max
Glyma.06G061700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 4646097-4647096 Glycine max
Glyma.06G061700 1.0kb downstream 1.0kb downstream 2994 true Chr06: 4643103-4646096 Glycine max
Glyma.06G061700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 4643103-4644102 Glycine max
Glyma.06G061700 2.0kb upstream 2.0kb upstream 3994 true Chr06: 4644103-4648096 Glycine max
Glyma.06G061700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 4646097-4648096 Glycine max
Glyma.06G061700 2.0kb downstream 2.0kb downstream 3994 true Chr06: 4642103-4646096 Glycine max
Glyma.06G061700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 4642103-4644102 Glycine max
Glyma.06G061700 5.0kb upstream 5.0kb upstream 6994 true Chr06: 4644103-4651096 Glycine max
Glyma.06G061700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 4646097-4651096 Glycine max
Glyma.06G061700 5.0kb downstream 5.0kb downstream 6994 true Chr06: 4639103-4646096 Glycine max
Glyma.06G061700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 4639103-4644102 Glycine max
Glyma.06G061700 10.0kb upstream 10.0kb upstream 11994 true Chr06: 4644103-4656096 Glycine max
Glyma.06G061700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 4646097-4656096 Glycine max
Glyma.06G061700 10.0kb downstream 10.0kb downstream 11994 true Chr06: 4634103-4646096 Glycine max
Glyma.06G061700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 4634103-4644102 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297137 5265 Fabidae View MSA
124041578 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.4657 0.0 5.40765    
cufflinks 0.629565 0.0 2.41272    
cufflinks 0.782481 0.0 2.96759    
cufflinks 1.14364 0.0 4.26609    
cufflinks 0.200173 0.0 0.801679 Low Low
cufflinks 29.5337 0.0 79.9197 High High
cufflinks 0.417273 0.0 1.62743    
cufflinks 0.264047 0.0 1.0463    
cufflinks 3.15969 0.0 11.0337    
cufflinks 0.348        
cufflinks 0.018     Low Low
cufflinks 0.552        
cufflinks 0.205        
cufflinks 0.067     Low  
cufflinks 0.291        
cufflinks 0.844       High
cufflinks 0.043     Low Low
cufflinks 0.66        
cufflinks 0.292        
cufflinks 0.332        
cufflinks 0.07        
cufflinks 0.809        
cufflinks 2.057       High
cufflinks 0.059     Low Low
cufflinks 0.587        
cufflinks 0.09        

0 Strain