Gene : Glyma.06G054600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22807:SF4 - NOL1/NOP2/SUN DOMAIN FAMILY MEMBER 5B-RELATED Genomic Order:  546
Name:  ? Glyma.06G054600 Secondary Identifier:  ? PAC:30549658
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G054600 0.5kb upstream 0.5kb upstream 5287 true Chr06: 4127900-4133186 Glycine max
Glyma.06G054600 0.5kb upstream 0.5kb upstream 500 false Chr06: 4127900-4128399 Glycine max
Glyma.06G054600 0.5kb downstream 0.5kb downstream 5287 true Chr06: 4128400-4133686 Glycine max
Glyma.06G054600 0.5kb downstream 0.5kb downstream 500 false Chr06: 4133187-4133686 Glycine max
Glyma.06G054600 1.0kb upstream 1.0kb upstream 5787 true Chr06: 4127400-4133186 Glycine max
Glyma.06G054600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 4127400-4128399 Glycine max
Glyma.06G054600 1.0kb downstream 1.0kb downstream 5787 true Chr06: 4128400-4134186 Glycine max
Glyma.06G054600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 4133187-4134186 Glycine max
Glyma.06G054600 2.0kb upstream 2.0kb upstream 6787 true Chr06: 4126400-4133186 Glycine max
Glyma.06G054600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 4126400-4128399 Glycine max
Glyma.06G054600 2.0kb downstream 2.0kb downstream 6787 true Chr06: 4128400-4135186 Glycine max
Glyma.06G054600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 4133187-4135186 Glycine max
Glyma.06G054600 5.0kb upstream 5.0kb upstream 9787 true Chr06: 4123400-4133186 Glycine max
Glyma.06G054600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 4123400-4128399 Glycine max
Glyma.06G054600 5.0kb downstream 5.0kb downstream 9787 true Chr06: 4128400-4138186 Glycine max
Glyma.06G054600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 4133187-4138186 Glycine max
Glyma.06G054600 10.0kb upstream 10.0kb upstream 14787 true Chr06: 4118400-4133186 Glycine max
Glyma.06G054600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 4118400-4128399 Glycine max
Glyma.06G054600 10.0kb downstream 10.0kb downstream 14787 true Chr06: 4128400-4143186 Glycine max
Glyma.06G054600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 4133187-4143186 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299949 5265 Fabidae View MSA
124061219 5270 Rosid View MSA
123738087 5271 Pentapetalae View MSA
122791189 5272 Eudicot View MSA
122043756 5273 Angiosperm View MSA
121346877 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.13741 0.0 19.8301    
cufflinks 8.00684 0.0 22.0281    
cufflinks 5.26237 0.0 15.0731    
cufflinks 6.47299 0.0 18.1142    
cufflinks 7.32101 0.0 20.2576    
cufflinks 4.17155 0.0 12.3114   Low
cufflinks 8.41235 0.0 23.0417   High
cufflinks 6.33483 0.0 17.759    
cufflinks 6.12153 0.0 17.2345    
cufflinks 1.691        
cufflinks 0.885       Low
cufflinks 2.678       High
cufflinks 2.598        
cufflinks 3.413       High
cufflinks 1.325        
cufflinks 1.718        
cufflinks 1.353        
cufflinks 2.929       High
cufflinks 3.676       High
cufflinks 1.247        
cufflinks 0.937       Low
cufflinks 1.559        
cufflinks 2.042        
cufflinks 1.074       Low
cufflinks 1.446        
cufflinks 1.203        

0 Strain