Gene : Glyma.06G083400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR12446:SF14 - PROTEIN LIN-54 HOMOLOG Genomic Order:  834
Name:  ? Glyma.06G083400 Secondary Identifier:  ? PAC:30549612
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G083400 0.5kb upstream 0.5kb upstream 6216 true Chr06: 6399093-6405308 Glycine max
Glyma.06G083400 0.5kb upstream 0.5kb upstream 500 false Chr06: 6404809-6405308 Glycine max
Glyma.06G083400 0.5kb downstream 0.5kb downstream 6216 true Chr06: 6398593-6404808 Glycine max
Glyma.06G083400 0.5kb downstream 0.5kb downstream 500 false Chr06: 6398593-6399092 Glycine max
Glyma.06G083400 1.0kb upstream 1.0kb upstream 6716 true Chr06: 6399093-6405808 Glycine max
Glyma.06G083400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6404809-6405808 Glycine max
Glyma.06G083400 1.0kb downstream 1.0kb downstream 6716 true Chr06: 6398093-6404808 Glycine max
Glyma.06G083400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6398093-6399092 Glycine max
Glyma.06G083400 2.0kb upstream 2.0kb upstream 7716 true Chr06: 6399093-6406808 Glycine max
Glyma.06G083400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6404809-6406808 Glycine max
Glyma.06G083400 2.0kb downstream 2.0kb downstream 7716 true Chr06: 6397093-6404808 Glycine max
Glyma.06G083400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6397093-6399092 Glycine max
Glyma.06G083400 5.0kb upstream 5.0kb upstream 10716 true Chr06: 6399093-6409808 Glycine max
Glyma.06G083400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6404809-6409808 Glycine max
Glyma.06G083400 5.0kb downstream 5.0kb downstream 10716 true Chr06: 6394093-6404808 Glycine max
Glyma.06G083400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6394093-6399092 Glycine max
Glyma.06G083400 10.0kb upstream 10.0kb upstream 15716 true Chr06: 6399093-6414808 Glycine max
Glyma.06G083400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6404809-6414808 Glycine max
Glyma.06G083400 10.0kb downstream 10.0kb downstream 15716 true Chr06: 6389093-6404808 Glycine max
Glyma.06G083400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6389093-6399092 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314609 5265 Fabidae View MSA
124073208 5270 Rosid View MSA
123756225 5271 Pentapetalae View MSA
122777394 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0420573 0.0 0.170232 Low Low
cufflinks 0.960975 0.0 5.08243    
cufflinks 0.257801 0.0 1.28518    
cufflinks 0.680905 0.0 4.89198    
cufflinks 0.40921 0.0 1.86139    
cufflinks 0.155818 0.0 0.788704 Low  
cufflinks 0.644472 0.0 2.83761    
cufflinks 1.54275 0.0 7.04269   High
cufflinks 0.375921 0.0 1.74854    
cufflinks 0.175        
cufflinks 0.019     Low Low
cufflinks 0.108     Low  
cufflinks 0.065     Low  
cufflinks 0.068     Low  
cufflinks 0.006     Low Low
cufflinks 0.162        
cufflinks 0.055     Low  
cufflinks 0.145        
cufflinks 0.225       High
cufflinks 0.104        
cufflinks 0.025     Low Low
cufflinks 0.147        
cufflinks 0.167        
cufflinks 0.036     Low  
cufflinks 0.131        
cufflinks 0.046     Low  

0 Strain