Gene : Glyma.06G085800 G. max Wm82.a2.v1
Defline:  (1 of 2) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  858
Name:  ? Glyma.06G085800 Secondary Identifier:  ? PAC:30553117
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G085800 0.5kb upstream 0.5kb upstream 4388 true Chr06: 6612160-6616547 Glycine max
Glyma.06G085800 0.5kb upstream 0.5kb upstream 500 false Chr06: 6612160-6612659 Glycine max
Glyma.06G085800 0.5kb downstream 0.5kb downstream 4388 true Chr06: 6612660-6617047 Glycine max
Glyma.06G085800 0.5kb downstream 0.5kb downstream 500 false Chr06: 6616548-6617047 Glycine max
Glyma.06G085800 1.0kb upstream 1.0kb upstream 4888 true Chr06: 6611660-6616547 Glycine max
Glyma.06G085800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6611660-6612659 Glycine max
Glyma.06G085800 1.0kb downstream 1.0kb downstream 4888 true Chr06: 6612660-6617547 Glycine max
Glyma.06G085800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6616548-6617547 Glycine max
Glyma.06G085800 2.0kb upstream 2.0kb upstream 5888 true Chr06: 6610660-6616547 Glycine max
Glyma.06G085800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6610660-6612659 Glycine max
Glyma.06G085800 2.0kb downstream 2.0kb downstream 5888 true Chr06: 6612660-6618547 Glycine max
Glyma.06G085800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6616548-6618547 Glycine max
Glyma.06G085800 5.0kb upstream 5.0kb upstream 8888 true Chr06: 6607660-6616547 Glycine max
Glyma.06G085800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6607660-6612659 Glycine max
Glyma.06G085800 5.0kb downstream 5.0kb downstream 8888 true Chr06: 6612660-6621547 Glycine max
Glyma.06G085800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6616548-6621547 Glycine max
Glyma.06G085800 10.0kb upstream 10.0kb upstream 13888 true Chr06: 6602660-6616547 Glycine max
Glyma.06G085800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6602660-6612659 Glycine max
Glyma.06G085800 10.0kb downstream 10.0kb downstream 13888 true Chr06: 6612660-6626547 Glycine max
Glyma.06G085800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6616548-6626547 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305580 5265 Fabidae View MSA
124065320 5270 Rosid View MSA
123738795 5271 Pentapetalae View MSA
122791259 5272 Eudicot View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0278436 0.0 0.115248 Low  
cufflinks 0.260521 0.0 0.981565    
cufflinks 0.0119841 0.0 0.0530453 Low Low
cufflinks 0.00516135 0.0 0.0248159 Low Low
cufflinks 1.1149 0.0 3.80124    
cufflinks 2.31173 0.0 7.15832    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.86581 0.0 5.96595    
cufflinks 1.17258 0.0 3.98126    
cufflinks 0.808       High
cufflinks 0.12        
cufflinks 0.009     Low Low
cufflinks 0.414        
cufflinks 0.049     Low  
cufflinks 0.044     Low  
cufflinks 0.028     Low  
cufflinks 1.55       High
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.356        
cufflinks 0.049     Low  
cufflinks 0.004     Low Low
cufflinks 0.24        
cufflinks 0.005     Low Low
cufflinks 0.229        

0 Strain