Gene : Glyma.06G077100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11717:SF2 - PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED Genomic Order:  771
Name:  ? Glyma.06G077100 Secondary Identifier:  ? PAC:30553490
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G077100 0.5kb upstream 0.5kb upstream 3782 true Chr06: 5953859-5957640 Glycine max
Glyma.06G077100 0.5kb upstream 0.5kb upstream 500 false Chr06: 5957141-5957640 Glycine max
Glyma.06G077100 0.5kb downstream 0.5kb downstream 3782 true Chr06: 5953359-5957140 Glycine max
Glyma.06G077100 0.5kb downstream 0.5kb downstream 500 false Chr06: 5953359-5953858 Glycine max
Glyma.06G077100 1.0kb upstream 1.0kb upstream 4282 true Chr06: 5953859-5958140 Glycine max
Glyma.06G077100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 5957141-5958140 Glycine max
Glyma.06G077100 1.0kb downstream 1.0kb downstream 4282 true Chr06: 5952859-5957140 Glycine max
Glyma.06G077100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 5952859-5953858 Glycine max
Glyma.06G077100 2.0kb upstream 2.0kb upstream 5282 true Chr06: 5953859-5959140 Glycine max
Glyma.06G077100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 5957141-5959140 Glycine max
Glyma.06G077100 2.0kb downstream 2.0kb downstream 5282 true Chr06: 5951859-5957140 Glycine max
Glyma.06G077100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 5951859-5953858 Glycine max
Glyma.06G077100 5.0kb upstream 5.0kb upstream 8282 true Chr06: 5953859-5962140 Glycine max
Glyma.06G077100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 5957141-5962140 Glycine max
Glyma.06G077100 5.0kb downstream 5.0kb downstream 8282 true Chr06: 5948859-5957140 Glycine max
Glyma.06G077100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 5948859-5953858 Glycine max
Glyma.06G077100 10.0kb upstream 10.0kb upstream 13282 true Chr06: 5953859-5967140 Glycine max
Glyma.06G077100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 5957141-5967140 Glycine max
Glyma.06G077100 10.0kb downstream 10.0kb downstream 13282 true Chr06: 5943859-5957140 Glycine max
Glyma.06G077100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 5943859-5953858 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243535 5265 Fabidae Singleton cluster - no MSA
124065557 5270 Rosid View MSA
123751866 5271 Pentapetalae View MSA
122787633 5272 Eudicot View MSA
122042660 5273 Angiosperm View MSA
121347081 5274 Embryophyte View MSA
123425673 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6634 0.0 30.8285    
cufflinks 8.62928 0.0 25.6374    
cufflinks 4.49538 0.0 14.6322   Low
cufflinks 5.57742 0.0 17.6127   Low
cufflinks 8.93562 0.0 26.3883    
cufflinks 15.2899 0.0 42.4569   High
cufflinks 9.24032 0.0 27.1832    
cufflinks 6.66099 0.0 20.5064    
cufflinks 8.39618 0.0 24.9998    
cufflinks 1.697        
cufflinks 1.787        
cufflinks 1.282       Low
cufflinks 2.934       High
cufflinks 3.093       High
cufflinks 2.276        
cufflinks 2.487        
cufflinks 1.354       Low
cufflinks 1.37       Low
cufflinks 2.006        
cufflinks 2.138        
cufflinks 2.463        
cufflinks 2.045        
cufflinks 3.038       High
cufflinks 2.082        
cufflinks 2.238        
cufflinks 1.727        

0 Strain