Gene : Glyma.06G080400 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  804
Name:  ? Glyma.06G080400 Secondary Identifier:  ? PAC:30553747
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G080400 0.5kb upstream 0.5kb upstream 2108 true Chr06: 6173462-6175569 Glycine max
Glyma.06G080400 0.5kb upstream 0.5kb upstream 500 false Chr06: 6175070-6175569 Glycine max
Glyma.06G080400 0.5kb downstream 0.5kb downstream 2108 true Chr06: 6172962-6175069 Glycine max
Glyma.06G080400 0.5kb downstream 0.5kb downstream 500 false Chr06: 6172962-6173461 Glycine max
Glyma.06G080400 1.0kb upstream 1.0kb upstream 2608 true Chr06: 6173462-6176069 Glycine max
Glyma.06G080400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6175070-6176069 Glycine max
Glyma.06G080400 1.0kb downstream 1.0kb downstream 2608 true Chr06: 6172462-6175069 Glycine max
Glyma.06G080400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6172462-6173461 Glycine max
Glyma.06G080400 2.0kb upstream 2.0kb upstream 3608 true Chr06: 6173462-6177069 Glycine max
Glyma.06G080400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6175070-6177069 Glycine max
Glyma.06G080400 2.0kb downstream 2.0kb downstream 3608 true Chr06: 6171462-6175069 Glycine max
Glyma.06G080400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6171462-6173461 Glycine max
Glyma.06G080400 5.0kb upstream 5.0kb upstream 6608 true Chr06: 6173462-6180069 Glycine max
Glyma.06G080400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6175070-6180069 Glycine max
Glyma.06G080400 5.0kb downstream 5.0kb downstream 6608 true Chr06: 6168462-6175069 Glycine max
Glyma.06G080400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6168462-6173461 Glycine max
Glyma.06G080400 10.0kb upstream 10.0kb upstream 11608 true Chr06: 6173462-6185069 Glycine max
Glyma.06G080400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6175070-6185069 Glycine max
Glyma.06G080400 10.0kb downstream 10.0kb downstream 11608 true Chr06: 6163462-6175069 Glycine max
Glyma.06G080400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6163462-6173461 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304445 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815285 0.0 2.94295   High
cufflinks 0.697083 0.0 2.5429    
cufflinks 0.292759 0.0 1.113    
cufflinks 0.436978 0.0 1.6326    
cufflinks 0.53059 0.0 1.96293    
cufflinks 0.148998 0.0 0.583172 Low Low
cufflinks 0.72522 0.0 2.63717    
cufflinks 0.22851 0.0 0.879215 Low Low
cufflinks 0.605868 0.0 2.22719    
cufflinks 0.31        
cufflinks 0.312        
cufflinks 0.41        
cufflinks 0.488        
cufflinks 0.798       High
cufflinks 0.222       Low
cufflinks 0.465        
cufflinks 0.605       High
cufflinks 0.461        
cufflinks 0.469        
cufflinks 0.476        
cufflinks 0.126       Low
cufflinks 0.441        
cufflinks 0.549        
cufflinks 0.324        
cufflinks 0.442        
cufflinks 0.189       Low

0 Strain