Gene : Glyma.06G080600 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR24058:SF44 - SERINE/THREONINE-PROTEIN KINASE AFC1 Genomic Order:  806
Name:  ? Glyma.06G080600 Secondary Identifier:  ? PAC:30551863
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G080600 0.5kb upstream 0.5kb upstream 4223 true Chr06: 6177922-6182144 Glycine max
Glyma.06G080600 0.5kb upstream 0.5kb upstream 500 false Chr06: 6181645-6182144 Glycine max
Glyma.06G080600 0.5kb downstream 0.5kb downstream 4223 true Chr06: 6177422-6181644 Glycine max
Glyma.06G080600 0.5kb downstream 0.5kb downstream 500 false Chr06: 6177422-6177921 Glycine max
Glyma.06G080600 1.0kb upstream 1.0kb upstream 4723 true Chr06: 6177922-6182644 Glycine max
Glyma.06G080600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 6181645-6182644 Glycine max
Glyma.06G080600 1.0kb downstream 1.0kb downstream 4723 true Chr06: 6176922-6181644 Glycine max
Glyma.06G080600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 6176922-6177921 Glycine max
Glyma.06G080600 2.0kb upstream 2.0kb upstream 5723 true Chr06: 6177922-6183644 Glycine max
Glyma.06G080600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 6181645-6183644 Glycine max
Glyma.06G080600 2.0kb downstream 2.0kb downstream 5723 true Chr06: 6175922-6181644 Glycine max
Glyma.06G080600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 6175922-6177921 Glycine max
Glyma.06G080600 5.0kb upstream 5.0kb upstream 8723 true Chr06: 6177922-6186644 Glycine max
Glyma.06G080600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 6181645-6186644 Glycine max
Glyma.06G080600 5.0kb downstream 5.0kb downstream 8723 true Chr06: 6172922-6181644 Glycine max
Glyma.06G080600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 6172922-6177921 Glycine max
Glyma.06G080600 10.0kb upstream 10.0kb upstream 13723 true Chr06: 6177922-6191644 Glycine max
Glyma.06G080600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 6181645-6191644 Glycine max
Glyma.06G080600 10.0kb downstream 10.0kb downstream 13723 true Chr06: 6167922-6181644 Glycine max
Glyma.06G080600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 6167922-6177921 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302698 5265 Fabidae View MSA
124060771 5270 Rosid View MSA
123738736 5271 Pentapetalae View MSA
122792665 5272 Eudicot View MSA
122044731 5273 Angiosperm View MSA
121349585 5274 Embryophyte View MSA
123426533 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3638 0.0 38.3575    
cufflinks 10.2588 0.0 39.1646    
cufflinks 15.9463 0.0 55.2259   High
cufflinks 9.10079 0.0 34.2424    
cufflinks 8.97272 0.0 30.3917    
cufflinks 7.1191 0.0 28.1265   Low
cufflinks 12.2043 0.0 45.7933    
cufflinks 8.11988 0.0 31.3    
cufflinks 8.8726 0.0 34.5731    
cufflinks 0.902       Low
cufflinks 1.73        
cufflinks 2.289       High
cufflinks 1.317        
cufflinks 1.491        
cufflinks 1.572        
cufflinks 1.627        
cufflinks 1.557        
cufflinks 2.266       High
cufflinks 1.768        
cufflinks 1.522        
cufflinks 1.454        
cufflinks 1.648        
cufflinks 1.801        
cufflinks 1.373        
cufflinks 1.617        
cufflinks 1.617        

0 Strain