Gene : Glyma.06G111200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  1112
Name:  ? Glyma.06G111200 Secondary Identifier:  ? PAC:30553142
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G111200 0.5kb upstream 0.5kb upstream 4920 true Chr06: 8998962-9003881 Glycine max
Glyma.06G111200 0.5kb upstream 0.5kb upstream 500 false Chr06: 9003382-9003881 Glycine max
Glyma.06G111200 0.5kb downstream 0.5kb downstream 4920 true Chr06: 8998462-9003381 Glycine max
Glyma.06G111200 0.5kb downstream 0.5kb downstream 500 false Chr06: 8998462-8998961 Glycine max
Glyma.06G111200 1.0kb upstream 1.0kb upstream 5420 true Chr06: 8998962-9004381 Glycine max
Glyma.06G111200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9003382-9004381 Glycine max
Glyma.06G111200 1.0kb downstream 1.0kb downstream 5420 true Chr06: 8997962-9003381 Glycine max
Glyma.06G111200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 8997962-8998961 Glycine max
Glyma.06G111200 2.0kb upstream 2.0kb upstream 6420 true Chr06: 8998962-9005381 Glycine max
Glyma.06G111200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9003382-9005381 Glycine max
Glyma.06G111200 2.0kb downstream 2.0kb downstream 6420 true Chr06: 8996962-9003381 Glycine max
Glyma.06G111200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 8996962-8998961 Glycine max
Glyma.06G111200 5.0kb upstream 5.0kb upstream 9420 true Chr06: 8998962-9008381 Glycine max
Glyma.06G111200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9003382-9008381 Glycine max
Glyma.06G111200 5.0kb downstream 5.0kb downstream 9420 true Chr06: 8993962-9003381 Glycine max
Glyma.06G111200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 8993962-8998961 Glycine max
Glyma.06G111200 10.0kb upstream 10.0kb upstream 14420 true Chr06: 8998962-9013381 Glycine max
Glyma.06G111200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9003382-9013381 Glycine max
Glyma.06G111200 10.0kb downstream 10.0kb downstream 14420 true Chr06: 8988962-9003381 Glycine max
Glyma.06G111200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 8988962-8998961 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304964 5265 Fabidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.4306 0.0 121.258 High  
cufflinks 20.8204 0.0 89.1951 High  
cufflinks 16.9929 0.0 72.8361   Low
cufflinks 20.7352 0.0 88.2245 High  
cufflinks 33.5799 0.0 129.345 High High
cufflinks 31.0647 0.0 118.963 High  
cufflinks 24.9045 0.0 95.5033 High  
cufflinks 23.3732 0.0 89.3191 High  
cufflinks 30.8423 0.0 129.563 High  
cufflinks 1.13       Low
cufflinks 1.748        
cufflinks 1.311        
cufflinks 2.48       High
cufflinks 3.056       High
cufflinks 2.344       High
cufflinks 1.514        
cufflinks 1.049       Low
cufflinks 1.351        
cufflinks 1.306        
cufflinks 1.418        
cufflinks 2.005        
cufflinks 1.342        
cufflinks 1.319        
cufflinks 1.531        
cufflinks 1.496        
cufflinks 1.796        

0 Strain