Gene : Glyma.06G113500 G. max Wm82.a2.v1
Defline:  (1 of 4) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  1135
Name:  ? Glyma.06G113500 Secondary Identifier:  ? PAC:30551676
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5068 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G113500 0.5kb upstream 0.5kb upstream 5900 true Chr06: 9213436-9219335 Glycine max
Glyma.06G113500 0.5kb upstream 0.5kb upstream 500 false Chr06: 9213436-9213935 Glycine max
Glyma.06G113500 0.5kb downstream 0.5kb downstream 5900 true Chr06: 9213936-9219835 Glycine max
Glyma.06G113500 0.5kb downstream 0.5kb downstream 500 false Chr06: 9219336-9219835 Glycine max
Glyma.06G113500 1.0kb upstream 1.0kb upstream 6400 true Chr06: 9212936-9219335 Glycine max
Glyma.06G113500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9212936-9213935 Glycine max
Glyma.06G113500 1.0kb downstream 1.0kb downstream 6400 true Chr06: 9213936-9220335 Glycine max
Glyma.06G113500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9219336-9220335 Glycine max
Glyma.06G113500 2.0kb upstream 2.0kb upstream 7400 true Chr06: 9211936-9219335 Glycine max
Glyma.06G113500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9211936-9213935 Glycine max
Glyma.06G113500 2.0kb downstream 2.0kb downstream 7400 true Chr06: 9213936-9221335 Glycine max
Glyma.06G113500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9219336-9221335 Glycine max
Glyma.06G113500 5.0kb upstream 5.0kb upstream 10400 true Chr06: 9208936-9219335 Glycine max
Glyma.06G113500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9208936-9213935 Glycine max
Glyma.06G113500 5.0kb downstream 5.0kb downstream 10400 true Chr06: 9213936-9224335 Glycine max
Glyma.06G113500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9219336-9224335 Glycine max
Glyma.06G113500 10.0kb upstream 10.0kb upstream 15400 true Chr06: 9203936-9219335 Glycine max
Glyma.06G113500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9203936-9213935 Glycine max
Glyma.06G113500 10.0kb downstream 10.0kb downstream 15400 true Chr06: 9213936-9229335 Glycine max
Glyma.06G113500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9219336-9229335 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309423 5265 Fabidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.86186 0.0 23.5895   High
cufflinks 1.93891 0.0 6.44625    
cufflinks 5.91882 0.0 23.1391   High
cufflinks 3.32215 0.0 12.9821    
cufflinks 2.05042 0.0 6.49831    
cufflinks 1.68241 0.0 5.80452    
cufflinks 4.31988 0.0 15.2636    
cufflinks 1.88687 0.0 8.41297    
cufflinks 1.10639 0.0 3.91108   Low
cufflinks 0.958        
cufflinks 0.312       Low
cufflinks 1.299        
cufflinks 0.492        
cufflinks 0.466        
cufflinks 0.523        
cufflinks 1.859       High
cufflinks 0.237       Low
cufflinks 0.67        
cufflinks 1.25        
cufflinks 1.478        
cufflinks 0.467        
cufflinks 1.909       High
cufflinks 1.271        
cufflinks 0.594        
cufflinks 2.414       High
cufflinks 0.473        

0 Strain