Gene : Glyma.06G116000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11669:SF17 - REPLICATION FACTOR C SUBUNIT 4 Genomic Order:  1160
Name:  ? Glyma.06G116000 Secondary Identifier:  ? PAC:30549742
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G116000 0.5kb upstream 0.5kb upstream 6439 true Chr06: 9434950-9441388 Glycine max
Glyma.06G116000 0.5kb upstream 0.5kb upstream 500 false Chr06: 9440889-9441388 Glycine max
Glyma.06G116000 0.5kb downstream 0.5kb downstream 6439 true Chr06: 9434450-9440888 Glycine max
Glyma.06G116000 0.5kb downstream 0.5kb downstream 500 false Chr06: 9434450-9434949 Glycine max
Glyma.06G116000 1.0kb upstream 1.0kb upstream 6939 true Chr06: 9434950-9441888 Glycine max
Glyma.06G116000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9440889-9441888 Glycine max
Glyma.06G116000 1.0kb downstream 1.0kb downstream 6939 true Chr06: 9433950-9440888 Glycine max
Glyma.06G116000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9433950-9434949 Glycine max
Glyma.06G116000 2.0kb upstream 2.0kb upstream 7939 true Chr06: 9434950-9442888 Glycine max
Glyma.06G116000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9440889-9442888 Glycine max
Glyma.06G116000 2.0kb downstream 2.0kb downstream 7939 true Chr06: 9432950-9440888 Glycine max
Glyma.06G116000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9432950-9434949 Glycine max
Glyma.06G116000 5.0kb upstream 5.0kb upstream 10939 true Chr06: 9434950-9445888 Glycine max
Glyma.06G116000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9440889-9445888 Glycine max
Glyma.06G116000 5.0kb downstream 5.0kb downstream 10939 true Chr06: 9429950-9440888 Glycine max
Glyma.06G116000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9429950-9434949 Glycine max
Glyma.06G116000 10.0kb upstream 10.0kb upstream 15939 true Chr06: 9434950-9450888 Glycine max
Glyma.06G116000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9440889-9450888 Glycine max
Glyma.06G116000 10.0kb downstream 10.0kb downstream 15939 true Chr06: 9424950-9440888 Glycine max
Glyma.06G116000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9424950-9434949 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041075 5273 Angiosperm View MSA
122306878 5265 Fabidae View MSA
124063235 5270 Rosid View MSA
123743026 5271 Pentapetalae View MSA
122791418 5272 Eudicot View MSA
121346056 5274 Embryophyte View MSA
123424600 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.85823 0.0 15.0516   Low
cufflinks 9.93431 0.0 36.0026   High
cufflinks 5.08939 0.0 18.5393    
cufflinks 6.19325 0.0 28.2348    
cufflinks 8.55877 0.0 35.7801    
cufflinks 6.81289 0.0 26.6399    
cufflinks 6.24851 0.0 28.4542    
cufflinks 5.22044 0.0 24.8881    
cufflinks 9.34499 0.0 37.7868   High
cufflinks 0.327        
cufflinks 0.145       Low
cufflinks 0.575       High
cufflinks 0.643       High
cufflinks 0.736       High
cufflinks 0.2        
cufflinks 0.347        
cufflinks 0.205        
cufflinks 0.353        
cufflinks 0.835       High
cufflinks 0.217        
cufflinks 0.235        
cufflinks 0.284        
cufflinks 0.661       High
cufflinks 0.223        
cufflinks 0.21        
cufflinks 0.281        

0 Strain