Gene : Glyma.06G136500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33231:SF1 - 30S RIBOSOMAL PROTEIN-RELATED Genomic Order:  1365
Name:  ? Glyma.06G136500 Secondary Identifier:  ? PAC:30550526
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G136500 0.5kb upstream 0.5kb upstream 2789 true Chr06: 11175164-11177952 Glycine max
Glyma.06G136500 0.5kb upstream 0.5kb upstream 500 false Chr06: 11177453-11177952 Glycine max
Glyma.06G136500 0.5kb downstream 0.5kb downstream 2789 true Chr06: 11174664-11177452 Glycine max
Glyma.06G136500 0.5kb downstream 0.5kb downstream 500 false Chr06: 11174664-11175163 Glycine max
Glyma.06G136500 1.0kb upstream 1.0kb upstream 3289 true Chr06: 11175164-11178452 Glycine max
Glyma.06G136500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 11177453-11178452 Glycine max
Glyma.06G136500 1.0kb downstream 1.0kb downstream 3289 true Chr06: 11174164-11177452 Glycine max
Glyma.06G136500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 11174164-11175163 Glycine max
Glyma.06G136500 2.0kb upstream 2.0kb upstream 4289 true Chr06: 11175164-11179452 Glycine max
Glyma.06G136500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 11177453-11179452 Glycine max
Glyma.06G136500 2.0kb downstream 2.0kb downstream 4289 true Chr06: 11173164-11177452 Glycine max
Glyma.06G136500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 11173164-11175163 Glycine max
Glyma.06G136500 5.0kb upstream 5.0kb upstream 7289 true Chr06: 11175164-11182452 Glycine max
Glyma.06G136500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 11177453-11182452 Glycine max
Glyma.06G136500 5.0kb downstream 5.0kb downstream 7289 true Chr06: 11170164-11177452 Glycine max
Glyma.06G136500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 11170164-11175163 Glycine max
Glyma.06G136500 10.0kb upstream 10.0kb upstream 12289 true Chr06: 11175164-11187452 Glycine max
Glyma.06G136500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 11177453-11187452 Glycine max
Glyma.06G136500 10.0kb downstream 10.0kb downstream 12289 true Chr06: 11165164-11177452 Glycine max
Glyma.06G136500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 11165164-11175163 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311273 5265 Fabidae View MSA
124068833 5270 Rosid View MSA
123738015 5271 Pentapetalae View MSA
122786116 5272 Eudicot View MSA
122044034 5273 Angiosperm View MSA
121345807 5274 Embryophyte View MSA
123423894 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.2775 0.0 232.599 High High
cufflinks 29.7398 0.0 113.139 High High
cufflinks 11.9181 0.0 46.7937    
cufflinks 18.148 0.0 69.6929    
cufflinks 7.1193 0.0 31.3431    
cufflinks 3.20538 0.0 16.6741   Low
cufflinks 17.9511 0.0 67.9026    
cufflinks 6.27057 0.0 28.565    
cufflinks 5.82563 0.0 24.0304    
cufflinks 5.182        
cufflinks 2.502        
cufflinks 11.959     High  
cufflinks 0.946       Low
cufflinks 1.04       Low
cufflinks 10.552     High  
cufflinks 51.428     High High
cufflinks 0.499       Low
cufflinks 11.77     High  
cufflinks 12.018     High  
cufflinks 114.067     High High
cufflinks 3.109        
cufflinks 61.211     High High
cufflinks 20.021     High  
cufflinks 3.031        
cufflinks 89.698     High High
cufflinks 0.8       Low

0 Strain