Gene : Glyma.06G128900 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1289
Name:  ? Glyma.06G128900 Secondary Identifier:  ? PAC:30550721
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G128900 0.5kb upstream 0.5kb upstream 3110 true Chr06: 10599712-10602821 Glycine max
Glyma.06G128900 0.5kb upstream 0.5kb upstream 500 false Chr06: 10599712-10600211 Glycine max
Glyma.06G128900 0.5kb downstream 0.5kb downstream 3110 true Chr06: 10600212-10603321 Glycine max
Glyma.06G128900 0.5kb downstream 0.5kb downstream 500 false Chr06: 10602822-10603321 Glycine max
Glyma.06G128900 1.0kb upstream 1.0kb upstream 3610 true Chr06: 10599212-10602821 Glycine max
Glyma.06G128900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 10599212-10600211 Glycine max
Glyma.06G128900 1.0kb downstream 1.0kb downstream 3610 true Chr06: 10600212-10603821 Glycine max
Glyma.06G128900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 10602822-10603821 Glycine max
Glyma.06G128900 2.0kb upstream 2.0kb upstream 4610 true Chr06: 10598212-10602821 Glycine max
Glyma.06G128900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 10598212-10600211 Glycine max
Glyma.06G128900 2.0kb downstream 2.0kb downstream 4610 true Chr06: 10600212-10604821 Glycine max
Glyma.06G128900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 10602822-10604821 Glycine max
Glyma.06G128900 5.0kb upstream 5.0kb upstream 7610 true Chr06: 10595212-10602821 Glycine max
Glyma.06G128900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 10595212-10600211 Glycine max
Glyma.06G128900 5.0kb downstream 5.0kb downstream 7610 true Chr06: 10600212-10607821 Glycine max
Glyma.06G128900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 10602822-10607821 Glycine max
Glyma.06G128900 10.0kb upstream 10.0kb upstream 12610 true Chr06: 10590212-10602821 Glycine max
Glyma.06G128900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 10590212-10600211 Glycine max
Glyma.06G128900 10.0kb downstream 10.0kb downstream 12610 true Chr06: 10600212-10612821 Glycine max
Glyma.06G128900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 10602822-10612821 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300709 5265 Fabidae View MSA
124060522 5270 Rosid View MSA
123738847 5271 Pentapetalae View MSA
122790244 5272 Eudicot View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.97729 0.0 34.7724   High
cufflinks 6.46254 0.0 23.3211    
cufflinks 4.33239 0.0 17.0343    
cufflinks 6.978 0.0 25.0552    
cufflinks 5.913 0.0 21.4809    
cufflinks 2.42389 0.0 9.62353   Low
cufflinks 8.38853 0.0 29.3089    
cufflinks 5.47409 0.0 20.2968    
cufflinks 5.46898 0.0 20.351    
cufflinks 1.986       Low
cufflinks 1.716       Low
cufflinks 4.996        
cufflinks 3.255        
cufflinks 4.617        
cufflinks 1.912       Low
cufflinks 4.611        
cufflinks 3.531        
cufflinks 4.025        
cufflinks 5.708       High
cufflinks 4.087        
cufflinks 1.274       Low
cufflinks 4.304        
cufflinks 5.395       High
cufflinks 1.798       Low
cufflinks 4.247        
cufflinks 3.114        

0 Strain