Gene : Glyma.06G123000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11679:SF3 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 Genomic Order:  1230
Name:  ? Glyma.06G123000 Secondary Identifier:  ? PAC:30552175
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G123000 0.5kb upstream 0.5kb upstream 7854 true Chr06: 10019949-10027802 Glycine max
Glyma.06G123000 0.5kb upstream 0.5kb upstream 500 false Chr06: 10019949-10020448 Glycine max
Glyma.06G123000 0.5kb downstream 0.5kb downstream 7854 true Chr06: 10020449-10028302 Glycine max
Glyma.06G123000 0.5kb downstream 0.5kb downstream 500 false Chr06: 10027803-10028302 Glycine max
Glyma.06G123000 1.0kb upstream 1.0kb upstream 8354 true Chr06: 10019449-10027802 Glycine max
Glyma.06G123000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 10019449-10020448 Glycine max
Glyma.06G123000 1.0kb downstream 1.0kb downstream 8354 true Chr06: 10020449-10028802 Glycine max
Glyma.06G123000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 10027803-10028802 Glycine max
Glyma.06G123000 2.0kb upstream 2.0kb upstream 9354 true Chr06: 10018449-10027802 Glycine max
Glyma.06G123000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 10018449-10020448 Glycine max
Glyma.06G123000 2.0kb downstream 2.0kb downstream 9354 true Chr06: 10020449-10029802 Glycine max
Glyma.06G123000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 10027803-10029802 Glycine max
Glyma.06G123000 5.0kb upstream 5.0kb upstream 12354 true Chr06: 10015449-10027802 Glycine max
Glyma.06G123000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 10015449-10020448 Glycine max
Glyma.06G123000 5.0kb downstream 5.0kb downstream 12354 true Chr06: 10020449-10032802 Glycine max
Glyma.06G123000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 10027803-10032802 Glycine max
Glyma.06G123000 10.0kb upstream 10.0kb upstream 17354 true Chr06: 10010449-10027802 Glycine max
Glyma.06G123000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 10010449-10020448 Glycine max
Glyma.06G123000 10.0kb downstream 10.0kb downstream 17354 true Chr06: 10020449-10037802 Glycine max
Glyma.06G123000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 10027803-10037802 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308424 5265 Fabidae View MSA
124069104 5270 Rosid View MSA
123737015 5271 Pentapetalae View MSA
122795036 5272 Eudicot View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.51371 0.0 10.1563    
cufflinks 3.07835 0.0 9.04251    
cufflinks 3.40161 0.0 9.83988    
cufflinks 3.71219 0.0 10.6462    
cufflinks 4.47095 0.0 12.586    
cufflinks 7.11018 0.0 19.2707   High
cufflinks 3.43921 0.0 10.0068    
cufflinks 3.90895 0.0 11.1478    
cufflinks 3.75633 0.0 10.768    
cufflinks 2.143        
cufflinks 0.783       Low
cufflinks 1.859        
cufflinks 2.663       High
cufflinks 2.991       High
cufflinks 0.465       Low
cufflinks 1.573        
cufflinks 0.793       Low
cufflinks 2.167        
cufflinks 1.752        
cufflinks 1.349        
cufflinks 0.796       Low
cufflinks 1.518        
cufflinks 1.441        
cufflinks 1.293        
cufflinks 1.336        
cufflinks 1.244        

0 Strain