Gene : Glyma.06G116600 G. max Wm82.a2.v1
Defline:  (1 of 24) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1166
Name:  ? Glyma.06G116600 Secondary Identifier:  ? PAC:30551684
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G116600 0.5kb upstream 0.5kb upstream 3768 true Chr06: 9486894-9490661 Glycine max
Glyma.06G116600 0.5kb upstream 0.5kb upstream 500 false Chr06: 9486894-9487393 Glycine max
Glyma.06G116600 0.5kb downstream 0.5kb downstream 3768 true Chr06: 9487394-9491161 Glycine max
Glyma.06G116600 0.5kb downstream 0.5kb downstream 500 false Chr06: 9490662-9491161 Glycine max
Glyma.06G116600 1.0kb upstream 1.0kb upstream 4268 true Chr06: 9486394-9490661 Glycine max
Glyma.06G116600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9486394-9487393 Glycine max
Glyma.06G116600 1.0kb downstream 1.0kb downstream 4268 true Chr06: 9487394-9491661 Glycine max
Glyma.06G116600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9490662-9491661 Glycine max
Glyma.06G116600 2.0kb upstream 2.0kb upstream 5268 true Chr06: 9485394-9490661 Glycine max
Glyma.06G116600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9485394-9487393 Glycine max
Glyma.06G116600 2.0kb downstream 2.0kb downstream 5268 true Chr06: 9487394-9492661 Glycine max
Glyma.06G116600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9490662-9492661 Glycine max
Glyma.06G116600 5.0kb upstream 5.0kb upstream 8268 true Chr06: 9482394-9490661 Glycine max
Glyma.06G116600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9482394-9487393 Glycine max
Glyma.06G116600 5.0kb downstream 5.0kb downstream 8268 true Chr06: 9487394-9495661 Glycine max
Glyma.06G116600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9490662-9495661 Glycine max
Glyma.06G116600 10.0kb upstream 10.0kb upstream 13268 true Chr06: 9477394-9490661 Glycine max
Glyma.06G116600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9477394-9487393 Glycine max
Glyma.06G116600 10.0kb downstream 10.0kb downstream 13268 true Chr06: 9487394-9500661 Glycine max
Glyma.06G116600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9490662-9500661 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299627 5265 Fabidae View MSA
124066699 5270 Rosid View MSA
123739132 5271 Pentapetalae View MSA
122788969 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.2146 0.0 6.83728    
cufflinks 1.31536 0.0 7.26608    
cufflinks 1.12254 0.0 6.65751    
cufflinks 1.11294 0.0 6.414    
cufflinks 0.758774 0.0 4.04318   Low
cufflinks 0.554699 0.0 3.20052   Low
cufflinks 1.8182 0.0 8.93897   High
cufflinks 1.12166 0.0 6.52793    
cufflinks 1.00555 0.0 5.04314    
cufflinks 0.236        
cufflinks 0.241        
cufflinks 0.652       High
cufflinks 0.244        
cufflinks 0.315        
cufflinks 0.258        
cufflinks 0.437        
cufflinks 0.29        
cufflinks 0.662       High
cufflinks 0.627       High
cufflinks 0.556        
cufflinks 0.203       Low
cufflinks 0.512        
cufflinks 0.513        
cufflinks 0.212       Low
cufflinks 0.436        
cufflinks 0.132       Low

0 Strain