Gene : Glyma.06G164600 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG2496 - Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit Genomic Order:  1646
Name:  ? Glyma.06G164600 Secondary Identifier:  ? PAC:30550600
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G164600 0.5kb upstream 0.5kb upstream 5347 true Chr06: 13622323-13627669 Glycine max
Glyma.06G164600 0.5kb upstream 0.5kb upstream 500 false Chr06: 13627170-13627669 Glycine max
Glyma.06G164600 0.5kb downstream 0.5kb downstream 5347 true Chr06: 13621823-13627169 Glycine max
Glyma.06G164600 0.5kb downstream 0.5kb downstream 500 false Chr06: 13621823-13622322 Glycine max
Glyma.06G164600 1.0kb upstream 1.0kb upstream 5847 true Chr06: 13622323-13628169 Glycine max
Glyma.06G164600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 13627170-13628169 Glycine max
Glyma.06G164600 1.0kb downstream 1.0kb downstream 5847 true Chr06: 13621323-13627169 Glycine max
Glyma.06G164600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 13621323-13622322 Glycine max
Glyma.06G164600 2.0kb upstream 2.0kb upstream 6847 true Chr06: 13622323-13629169 Glycine max
Glyma.06G164600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 13627170-13629169 Glycine max
Glyma.06G164600 2.0kb downstream 2.0kb downstream 6847 true Chr06: 13620323-13627169 Glycine max
Glyma.06G164600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 13620323-13622322 Glycine max
Glyma.06G164600 5.0kb upstream 5.0kb upstream 9847 true Chr06: 13622323-13632169 Glycine max
Glyma.06G164600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 13627170-13632169 Glycine max
Glyma.06G164600 5.0kb downstream 5.0kb downstream 9847 true Chr06: 13617323-13627169 Glycine max
Glyma.06G164600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 13617323-13622322 Glycine max
Glyma.06G164600 10.0kb upstream 10.0kb upstream 14847 true Chr06: 13622323-13637169 Glycine max
Glyma.06G164600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 13627170-13637169 Glycine max
Glyma.06G164600 10.0kb downstream 10.0kb downstream 14847 true Chr06: 13612323-13627169 Glycine max
Glyma.06G164600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 13612323-13622322 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309255 5265 Fabidae View MSA
124064270 5270 Rosid View MSA
123739279 5271 Pentapetalae View MSA
122793594 5272 Eudicot View MSA
122044761 5273 Angiosperm View MSA
121344916 5274 Embryophyte View MSA
123425113 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6991 0.0 49.9289   Low
cufflinks 15.9973 0.0 54.2882    
cufflinks 21.1477 0.0 71.9215 High High
cufflinks 16.7427 0.0 56.781    
cufflinks 21.9562 0.0 74.6516 High High
cufflinks 20.5466 0.0 69.8182    
cufflinks 15.5335 0.0 52.7211   Low
cufflinks 18.6746 0.0 63.5553    
cufflinks 19.7459 0.0 66.8628 High  
cufflinks 2.935        
cufflinks 2.158       Low
cufflinks 3.958       High
cufflinks 4.112       High
cufflinks 4.408       High
cufflinks 2.272        
cufflinks 2.752        
cufflinks 2.189       Low
cufflinks 4.112       High
cufflinks 3.221        
cufflinks 2.58        
cufflinks 2.233        
cufflinks 2.732        
cufflinks 2.471        
cufflinks 2.302        
cufflinks 2.669        
cufflinks 2.451        

0 Strain