Gene : Glyma.06G150000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  1500
Name:  ? Glyma.06G150000 Secondary Identifier:  ? PAC:30551527
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARGSYNBSUB-PWY Glycine max pathologic  
Gmax ARGSYN-PWY Glycine max pathologic  
Gmax CITRULBIO-PWY Glycine max pathologic  
Gmax GLUTAMINDEG-PWY Glycine max pathologic  
Gmax PWY0-162 Glycine max pathologic  
Gmax PWY-4984 Glycine max pathologic  
Gmax PWY-5686 Glycine max pathologic  
Gmax PWY-7211 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G150000 0.5kb upstream 0.5kb upstream 3876 true Chr06: 12250582-12254457 Glycine max
Glyma.06G150000 0.5kb upstream 0.5kb upstream 500 false Chr06: 12250582-12251081 Glycine max
Glyma.06G150000 0.5kb downstream 0.5kb downstream 3876 true Chr06: 12251082-12254957 Glycine max
Glyma.06G150000 0.5kb downstream 0.5kb downstream 500 false Chr06: 12254458-12254957 Glycine max
Glyma.06G150000 1.0kb upstream 1.0kb upstream 4376 true Chr06: 12250082-12254457 Glycine max
Glyma.06G150000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 12250082-12251081 Glycine max
Glyma.06G150000 1.0kb downstream 1.0kb downstream 4376 true Chr06: 12251082-12255457 Glycine max
Glyma.06G150000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 12254458-12255457 Glycine max
Glyma.06G150000 2.0kb upstream 2.0kb upstream 5376 true Chr06: 12249082-12254457 Glycine max
Glyma.06G150000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 12249082-12251081 Glycine max
Glyma.06G150000 2.0kb downstream 2.0kb downstream 5376 true Chr06: 12251082-12256457 Glycine max
Glyma.06G150000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 12254458-12256457 Glycine max
Glyma.06G150000 5.0kb upstream 5.0kb upstream 8376 true Chr06: 12246082-12254457 Glycine max
Glyma.06G150000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 12246082-12251081 Glycine max
Glyma.06G150000 5.0kb downstream 5.0kb downstream 8376 true Chr06: 12251082-12259457 Glycine max
Glyma.06G150000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 12254458-12259457 Glycine max
Glyma.06G150000 10.0kb upstream 10.0kb upstream 13376 true Chr06: 12241082-12254457 Glycine max
Glyma.06G150000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 12241082-12251081 Glycine max
Glyma.06G150000 10.0kb downstream 10.0kb downstream 13376 true Chr06: 12251082-12264457 Glycine max
Glyma.06G150000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 12254458-12264457 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313354 5265 Fabidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.1199 0.0 296.836 High High
cufflinks 21.5651 0.0 86.126 High  
cufflinks 24.4648 0.0 116.07 High  
cufflinks 32.6108 0.0 163.542 High  
cufflinks 19.5611 0.0 95.0101    
cufflinks 11.0062 0.0 46.5312   Low
cufflinks 86.0777 0.0 518.665 High High
cufflinks 23.3303 0.0 111.261 High  
cufflinks 16.0388 0.0 77.2218    
cufflinks 2.001        
cufflinks 1.056       Low
cufflinks 2.952        
cufflinks 2.762        
cufflinks 3.756        
cufflinks 1.306       Low
cufflinks 3.296        
cufflinks 1.663        
cufflinks 2.683        
cufflinks 3.274        
cufflinks 4.555       High
cufflinks 2.05        
cufflinks 4.115       High
cufflinks 3.4        
cufflinks 1.367       Low
cufflinks 3.984       High
cufflinks 1.216       Low

0 Strain