Gene : Glyma.06G144800 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1448
Name:  ? Glyma.06G144800 Secondary Identifier:  ? PAC:30551338
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G144800 0.5kb upstream 0.5kb upstream 4959 true Chr06: 11779380-11784338 Glycine max
Glyma.06G144800 0.5kb upstream 0.5kb upstream 500 false Chr06: 11779380-11779879 Glycine max
Glyma.06G144800 0.5kb downstream 0.5kb downstream 4959 true Chr06: 11779880-11784838 Glycine max
Glyma.06G144800 0.5kb downstream 0.5kb downstream 500 false Chr06: 11784339-11784838 Glycine max
Glyma.06G144800 1.0kb upstream 1.0kb upstream 5459 true Chr06: 11778880-11784338 Glycine max
Glyma.06G144800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 11778880-11779879 Glycine max
Glyma.06G144800 1.0kb downstream 1.0kb downstream 5459 true Chr06: 11779880-11785338 Glycine max
Glyma.06G144800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 11784339-11785338 Glycine max
Glyma.06G144800 2.0kb upstream 2.0kb upstream 6459 true Chr06: 11777880-11784338 Glycine max
Glyma.06G144800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 11777880-11779879 Glycine max
Glyma.06G144800 2.0kb downstream 2.0kb downstream 6459 true Chr06: 11779880-11786338 Glycine max
Glyma.06G144800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 11784339-11786338 Glycine max
Glyma.06G144800 5.0kb upstream 5.0kb upstream 9459 true Chr06: 11774880-11784338 Glycine max
Glyma.06G144800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 11774880-11779879 Glycine max
Glyma.06G144800 5.0kb downstream 5.0kb downstream 9459 true Chr06: 11779880-11789338 Glycine max
Glyma.06G144800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 11784339-11789338 Glycine max
Glyma.06G144800 10.0kb upstream 10.0kb upstream 14459 true Chr06: 11769880-11784338 Glycine max
Glyma.06G144800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 11769880-11779879 Glycine max
Glyma.06G144800 10.0kb downstream 10.0kb downstream 14459 true Chr06: 11779880-11794338 Glycine max
Glyma.06G144800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 11784339-11794338 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040975 5273 Angiosperm View MSA
122315321 5265 Fabidae View MSA
124067811 5270 Rosid View MSA
123746701 5271 Pentapetalae View MSA
122790264 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.217922 0.0 0.914392    
cufflinks 0.253896 0.0 1.00886    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.236795 0.0 0.921602 Low  
cufflinks 0.016145 0.0 0.0760746 Low Low
cufflinks 0.160727 0.0 0.65819 Low  
cufflinks 0.181156 0.0 0.870789 Low  
cufflinks 0.133       High
cufflinks 0.02     Low  
cufflinks 0.026     Low  
cufflinks 0.098       High
cufflinks 0.03     Low  
cufflinks 0.012     Low  
cufflinks 0.013     Low  
cufflinks 0.01     Low  
cufflinks 0.017     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.01     Low  
cufflinks 0.015     Low  
cufflinks 0.013     Low  
cufflinks 0.004     Low Low
cufflinks 0.012     Low  

0 Strain