Gene : Glyma.06G188800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13208 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 Genomic Order:  1888
Name:  ? Glyma.06G188800 Secondary Identifier:  ? PAC:30551340
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G188800 0.5kb upstream 0.5kb upstream 3411 true Chr06: 16467325-16470735 Glycine max
Glyma.06G188800 0.5kb upstream 0.5kb upstream 500 false Chr06: 16467325-16467824 Glycine max
Glyma.06G188800 0.5kb downstream 0.5kb downstream 3411 true Chr06: 16467825-16471235 Glycine max
Glyma.06G188800 0.5kb downstream 0.5kb downstream 500 false Chr06: 16470736-16471235 Glycine max
Glyma.06G188800 1.0kb upstream 1.0kb upstream 3911 true Chr06: 16466825-16470735 Glycine max
Glyma.06G188800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 16466825-16467824 Glycine max
Glyma.06G188800 1.0kb downstream 1.0kb downstream 3911 true Chr06: 16467825-16471735 Glycine max
Glyma.06G188800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 16470736-16471735 Glycine max
Glyma.06G188800 2.0kb upstream 2.0kb upstream 4911 true Chr06: 16465825-16470735 Glycine max
Glyma.06G188800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 16465825-16467824 Glycine max
Glyma.06G188800 2.0kb downstream 2.0kb downstream 4911 true Chr06: 16467825-16472735 Glycine max
Glyma.06G188800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 16470736-16472735 Glycine max
Glyma.06G188800 5.0kb upstream 5.0kb upstream 7911 true Chr06: 16462825-16470735 Glycine max
Glyma.06G188800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 16462825-16467824 Glycine max
Glyma.06G188800 5.0kb downstream 5.0kb downstream 7911 true Chr06: 16467825-16475735 Glycine max
Glyma.06G188800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 16470736-16475735 Glycine max
Glyma.06G188800 10.0kb upstream 10.0kb upstream 12911 true Chr06: 16457825-16470735 Glycine max
Glyma.06G188800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 16457825-16467824 Glycine max
Glyma.06G188800 10.0kb downstream 10.0kb downstream 12911 true Chr06: 16467825-16480735 Glycine max
Glyma.06G188800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 16470736-16480735 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315116 5265 Fabidae View MSA
124063104 5270 Rosid View MSA
123737443 5271 Pentapetalae View MSA
122786979 5272 Eudicot View MSA
122042269 5273 Angiosperm View MSA
121345208 5274 Embryophyte View MSA
123380175 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5037 0.0 36.1661   High
cufflinks 6.19903 0.0 17.4651    
cufflinks 8.32865 0.0 22.8954    
cufflinks 9.69765 0.0 26.3511    
cufflinks 8.82449 0.0 24.0933    
cufflinks 6.18593 0.0 17.4134    
cufflinks 4.98128 0.0 14.3832   Low
cufflinks 7.13476 0.0 19.7758    
cufflinks 6.55355 0.0 18.3324    
cufflinks 3.285        
cufflinks 3.507        
cufflinks 5.015       High
cufflinks 3.784        
cufflinks 4.109        
cufflinks 4.686       High
cufflinks 3.145        
cufflinks 3.013       Low
cufflinks 4.38       High
cufflinks 4.667       High
cufflinks 3.176        
cufflinks 3.905        
cufflinks 3.49        
cufflinks 3.626        
cufflinks 3.58        
cufflinks 2.862       Low
cufflinks 3.16        

0 Strain