Gene : Glyma.06G194900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21649:SF17 - CHLOROPHYLL A-B BINDING PROTEIN 4, CHLOROPLASTIC Genomic Order:  1949
Name:  ? Glyma.06G194900 Secondary Identifier:  ? PAC:30553869
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G194900 0.5kb upstream 0.5kb upstream 2880 true Chr06: 17418515-17421394 Glycine max
Glyma.06G194900 0.5kb upstream 0.5kb upstream 500 false Chr06: 17420895-17421394 Glycine max
Glyma.06G194900 0.5kb downstream 0.5kb downstream 2880 true Chr06: 17418015-17420894 Glycine max
Glyma.06G194900 0.5kb downstream 0.5kb downstream 500 false Chr06: 17418015-17418514 Glycine max
Glyma.06G194900 1.0kb upstream 1.0kb upstream 3380 true Chr06: 17418515-17421894 Glycine max
Glyma.06G194900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 17420895-17421894 Glycine max
Glyma.06G194900 1.0kb downstream 1.0kb downstream 3380 true Chr06: 17417515-17420894 Glycine max
Glyma.06G194900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 17417515-17418514 Glycine max
Glyma.06G194900 2.0kb upstream 2.0kb upstream 4380 true Chr06: 17418515-17422894 Glycine max
Glyma.06G194900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 17420895-17422894 Glycine max
Glyma.06G194900 2.0kb downstream 2.0kb downstream 4380 true Chr06: 17416515-17420894 Glycine max
Glyma.06G194900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 17416515-17418514 Glycine max
Glyma.06G194900 5.0kb upstream 5.0kb upstream 7380 true Chr06: 17418515-17425894 Glycine max
Glyma.06G194900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 17420895-17425894 Glycine max
Glyma.06G194900 5.0kb downstream 5.0kb downstream 7380 true Chr06: 17413515-17420894 Glycine max
Glyma.06G194900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 17413515-17418514 Glycine max
Glyma.06G194900 10.0kb upstream 10.0kb upstream 12380 true Chr06: 17418515-17430894 Glycine max
Glyma.06G194900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 17420895-17430894 Glycine max
Glyma.06G194900 10.0kb downstream 10.0kb downstream 12380 true Chr06: 17408515-17420894 Glycine max
Glyma.06G194900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 17408515-17418514 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313401 5265 Fabidae View MSA
124068607 5270 Rosid View MSA
123738583 5271 Pentapetalae View MSA
122789063 5272 Eudicot View MSA
122041547 5273 Angiosperm View MSA
121346524 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 253.607 0.0 872.201 High High
cufflinks 252.693 0.0 864.219 High  
cufflinks 74.7874 0.0 208.995 High  
cufflinks 200.229 0.0 651.265 High  
cufflinks 11.115 0.0 30.997   Low
cufflinks 9.2996 0.0 26.445   Low
cufflinks 75.3651 0.0 211.681 High  
cufflinks 146.484 0.0 452.577 High  
cufflinks 7.63507 0.0 22.2358   Low
cufflinks 96.565     High  
cufflinks 0.069       Low
cufflinks 65.06     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.523        
cufflinks 479.675     High  
cufflinks 0.006     Low Low
cufflinks 66.098     High  
cufflinks 116.178     High  
cufflinks 570.278     High  
cufflinks 0.09       Low
cufflinks 536.997     High  
cufflinks 326.933     High  
cufflinks 0.041     Low Low
cufflinks 557.346     High  
cufflinks 0.022     Low Low

0 Strain