Gene : Glyma.06G178200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10629//PTHR10629:SF36 - CYTOSINE-SPECIFIC METHYLTRANSFERASE Genomic Order:  1782
Name:  ? Glyma.06G178200 Secondary Identifier:  ? PAC:30551197
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G178200 0.5kb upstream 0.5kb upstream 8550 true Chr06: 15082950-15091499 Glycine max
Glyma.06G178200 0.5kb upstream 0.5kb upstream 500 false Chr06: 15082950-15083449 Glycine max
Glyma.06G178200 0.5kb downstream 0.5kb downstream 8550 true Chr06: 15083450-15091999 Glycine max
Glyma.06G178200 0.5kb downstream 0.5kb downstream 500 false Chr06: 15091500-15091999 Glycine max
Glyma.06G178200 1.0kb upstream 1.0kb upstream 9050 true Chr06: 15082450-15091499 Glycine max
Glyma.06G178200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 15082450-15083449 Glycine max
Glyma.06G178200 1.0kb downstream 1.0kb downstream 9050 true Chr06: 15083450-15092499 Glycine max
Glyma.06G178200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 15091500-15092499 Glycine max
Glyma.06G178200 2.0kb upstream 2.0kb upstream 10050 true Chr06: 15081450-15091499 Glycine max
Glyma.06G178200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 15081450-15083449 Glycine max
Glyma.06G178200 2.0kb downstream 2.0kb downstream 10050 true Chr06: 15083450-15093499 Glycine max
Glyma.06G178200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 15091500-15093499 Glycine max
Glyma.06G178200 5.0kb upstream 5.0kb upstream 13050 true Chr06: 15078450-15091499 Glycine max
Glyma.06G178200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 15078450-15083449 Glycine max
Glyma.06G178200 5.0kb downstream 5.0kb downstream 13050 true Chr06: 15083450-15096499 Glycine max
Glyma.06G178200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 15091500-15096499 Glycine max
Glyma.06G178200 10.0kb upstream 10.0kb upstream 18050 true Chr06: 15073450-15091499 Glycine max
Glyma.06G178200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 15073450-15083449 Glycine max
Glyma.06G178200 10.0kb downstream 10.0kb downstream 18050 true Chr06: 15083450-15101499 Glycine max
Glyma.06G178200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 15091500-15101499 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299671 5265 Fabidae View MSA
124066065 5270 Rosid View MSA
123746756 5271 Pentapetalae View MSA
122791614 5272 Eudicot View MSA
122044527 5273 Angiosperm View MSA
121344119 5274 Embryophyte View MSA
123428443 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.51758 0.0 7.98217   Low
cufflinks 10.8256 0.0 34.6892   High
cufflinks 3.68022 0.0 11.3566    
cufflinks 5.60409 0.0 16.5103    
cufflinks 6.96211 0.0 25.1085    
cufflinks 3.41455 0.0 10.5244    
cufflinks 4.70357 0.0 14.4601    
cufflinks 4.31128 0.0 15.7327    
cufflinks 7.78463 0.0 23.9545    
cufflinks 1.433        
cufflinks 0.504       Low
cufflinks 1.826        
cufflinks 3.021       High
cufflinks 3.359       High
cufflinks 0.631       Low
cufflinks 2.101        
cufflinks 0.807        
cufflinks 1.489        
cufflinks 5.59       High
cufflinks 1.354        
cufflinks 0.721       Low
cufflinks 1.872        
cufflinks 3.392       High
cufflinks 0.898        
cufflinks 1.721        
cufflinks 0.931        

0 Strain