Gene : Glyma.06G223500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12601:SF9 - TETRATRICOPEPTIDE REPEAT DOMAIN PROTEIN Genomic Order:  2235
Name:  ? Glyma.06G223500 Secondary Identifier:  ? PAC:30552179
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G223500 0.5kb upstream 0.5kb upstream 18696 true Chr06: 29619322-29638017 Glycine max
Glyma.06G223500 0.5kb upstream 0.5kb upstream 500 false Chr06: 29619322-29619821 Glycine max
Glyma.06G223500 0.5kb downstream 0.5kb downstream 18696 true Chr06: 29619822-29638517 Glycine max
Glyma.06G223500 0.5kb downstream 0.5kb downstream 500 false Chr06: 29638018-29638517 Glycine max
Glyma.06G223500 1.0kb upstream 1.0kb upstream 19196 true Chr06: 29618822-29638017 Glycine max
Glyma.06G223500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29618822-29619821 Glycine max
Glyma.06G223500 1.0kb downstream 1.0kb downstream 19196 true Chr06: 29619822-29639017 Glycine max
Glyma.06G223500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29638018-29639017 Glycine max
Glyma.06G223500 2.0kb upstream 2.0kb upstream 20196 true Chr06: 29617822-29638017 Glycine max
Glyma.06G223500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29617822-29619821 Glycine max
Glyma.06G223500 2.0kb downstream 2.0kb downstream 20196 true Chr06: 29619822-29640017 Glycine max
Glyma.06G223500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29638018-29640017 Glycine max
Glyma.06G223500 5.0kb upstream 5.0kb upstream 23196 true Chr06: 29614822-29638017 Glycine max
Glyma.06G223500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29614822-29619821 Glycine max
Glyma.06G223500 5.0kb downstream 5.0kb downstream 23196 true Chr06: 29619822-29643017 Glycine max
Glyma.06G223500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29638018-29643017 Glycine max
Glyma.06G223500 10.0kb upstream 10.0kb upstream 28196 true Chr06: 29609822-29638017 Glycine max
Glyma.06G223500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29609822-29619821 Glycine max
Glyma.06G223500 10.0kb downstream 10.0kb downstream 28196 true Chr06: 29619822-29648017 Glycine max
Glyma.06G223500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29638018-29648017 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305487 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.9709 0.0 72.7753   High
cufflinks 9.11077 0.0 29.0887    
cufflinks 4.57603 0.0 15.7708    
cufflinks 4.198 0.0 14.4181    
cufflinks 1.09424 0.0 4.08183    
cufflinks 0.764554 0.0 3.16689   Low
cufflinks 3.98085 0.0 13.7882    
cufflinks 2.87419 0.0 10.184    
cufflinks 0.725482 0.0 3.08248   Low
cufflinks 2.1        
cufflinks 0.154        
cufflinks 1.586        
cufflinks 0.123        
cufflinks 0.118        
cufflinks 0.089       Low
cufflinks 12.928     High High
cufflinks 0.102       Low
cufflinks 1.445        
cufflinks 3.451        
cufflinks 16.773     High High
cufflinks 0.133        
cufflinks 14.557     High High
cufflinks 9.057     High High
cufflinks 0.137        
cufflinks 16.209     High High
cufflinks 0.128        

0 Strain