Gene : Glyma.06G217400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10102:SF1 - DNA-DIRECTED RNA POLYMERASE 3, CHLOROPLASTIC Genomic Order:  2174
Name:  ? Glyma.06G217400 Secondary Identifier:  ? PAC:30551805
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G217400 0.5kb upstream 0.5kb upstream 30157 true Chr06: 22911829-22941985 Glycine max
Glyma.06G217400 0.5kb upstream 0.5kb upstream 500 false Chr06: 22941486-22941985 Glycine max
Glyma.06G217400 0.5kb downstream 0.5kb downstream 30157 true Chr06: 22911329-22941485 Glycine max
Glyma.06G217400 0.5kb downstream 0.5kb downstream 500 false Chr06: 22911329-22911828 Glycine max
Glyma.06G217400 1.0kb upstream 1.0kb upstream 30657 true Chr06: 22911829-22942485 Glycine max
Glyma.06G217400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22941486-22942485 Glycine max
Glyma.06G217400 1.0kb downstream 1.0kb downstream 30657 true Chr06: 22910829-22941485 Glycine max
Glyma.06G217400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22910829-22911828 Glycine max
Glyma.06G217400 2.0kb upstream 2.0kb upstream 31657 true Chr06: 22911829-22943485 Glycine max
Glyma.06G217400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22941486-22943485 Glycine max
Glyma.06G217400 2.0kb downstream 2.0kb downstream 31657 true Chr06: 22909829-22941485 Glycine max
Glyma.06G217400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22909829-22911828 Glycine max
Glyma.06G217400 5.0kb upstream 5.0kb upstream 34657 true Chr06: 22911829-22946485 Glycine max
Glyma.06G217400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22941486-22946485 Glycine max
Glyma.06G217400 5.0kb downstream 5.0kb downstream 34657 true Chr06: 22906829-22941485 Glycine max
Glyma.06G217400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22906829-22911828 Glycine max
Glyma.06G217400 10.0kb upstream 10.0kb upstream 39657 true Chr06: 22911829-22951485 Glycine max
Glyma.06G217400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22941486-22951485 Glycine max
Glyma.06G217400 10.0kb downstream 10.0kb downstream 39657 true Chr06: 22901829-22941485 Glycine max
Glyma.06G217400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22901829-22911828 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310024 5265 Fabidae View MSA
124071621 5270 Rosid View MSA
123742172 5271 Pentapetalae View MSA
122791683 5272 Eudicot View MSA
122050149 5273 Angiosperm View MSA
121347767 5274 Embryophyte View MSA
123426573 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.34015 0.0 23.6468   High
cufflinks 3.26047 0.0 13.3843    
cufflinks 2.18536 0.0 11.1386    
cufflinks 4.01529 0.0 15.777    
cufflinks 1.88059 0.0 6.91648    
cufflinks 0.582096 0.0 2.3271   Low
cufflinks 3.19105 0.0 10.3603    
cufflinks 2.21646 0.0 7.79959    
cufflinks 1.98675 0.0 7.18677    
cufflinks 0.096     Low  
cufflinks 0.1        
cufflinks 0.147        
cufflinks 0.047     Low Low
cufflinks 0.063     Low Low
cufflinks 0.138        
cufflinks 0.274       High
cufflinks 0.063     Low Low
cufflinks 0.169        
cufflinks 0.174        
cufflinks 0.338       High
cufflinks 0.102        
cufflinks 0.331       High
cufflinks 0.272       High
cufflinks 0.074        
cufflinks 0.35       High
cufflinks 0.053     Low Low

0 Strain