Gene : Glyma.06G217900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  2179
Name:  ? Glyma.06G217900 Secondary Identifier:  ? PAC:30549821
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G217900 0.5kb upstream 0.5kb upstream 2535 true Chr06: 23309129-23311663 Glycine max
Glyma.06G217900 0.5kb upstream 0.5kb upstream 500 false Chr06: 23311164-23311663 Glycine max
Glyma.06G217900 0.5kb downstream 0.5kb downstream 2535 true Chr06: 23308629-23311163 Glycine max
Glyma.06G217900 0.5kb downstream 0.5kb downstream 500 false Chr06: 23308629-23309128 Glycine max
Glyma.06G217900 1.0kb upstream 1.0kb upstream 3035 true Chr06: 23309129-23312163 Glycine max
Glyma.06G217900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23311164-23312163 Glycine max
Glyma.06G217900 1.0kb downstream 1.0kb downstream 3035 true Chr06: 23308129-23311163 Glycine max
Glyma.06G217900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23308129-23309128 Glycine max
Glyma.06G217900 2.0kb upstream 2.0kb upstream 4035 true Chr06: 23309129-23313163 Glycine max
Glyma.06G217900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23311164-23313163 Glycine max
Glyma.06G217900 2.0kb downstream 2.0kb downstream 4035 true Chr06: 23307129-23311163 Glycine max
Glyma.06G217900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23307129-23309128 Glycine max
Glyma.06G217900 5.0kb upstream 5.0kb upstream 7035 true Chr06: 23309129-23316163 Glycine max
Glyma.06G217900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23311164-23316163 Glycine max
Glyma.06G217900 5.0kb downstream 5.0kb downstream 7035 true Chr06: 23304129-23311163 Glycine max
Glyma.06G217900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23304129-23309128 Glycine max
Glyma.06G217900 10.0kb upstream 10.0kb upstream 12035 true Chr06: 23309129-23321163 Glycine max
Glyma.06G217900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23311164-23321163 Glycine max
Glyma.06G217900 10.0kb downstream 10.0kb downstream 12035 true Chr06: 23299129-23311163 Glycine max
Glyma.06G217900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23299129-23309128 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239621 5265 Fabidae Singleton cluster - no MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.1311 0.0 96.0048 High High
cufflinks 8.80874 0.0 29.6381    
cufflinks 3.56339 0.0 12.9365    
cufflinks 62.2189 0.0 167.538 High High
cufflinks 0.91698 0.0 3.55273   Low
cufflinks 0.824939 0.0 3.20951   Low
cufflinks 18.4059 0.0 55.7723    
cufflinks 4.41061 0.0 15.7978    
cufflinks 2.15893 0.0 8.05083    
cufflinks 1.263        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.308        
cufflinks 0.047     Low  
cufflinks 0.072     Low  
cufflinks 0.009     Low Low
cufflinks 1.933        
cufflinks 0.078        
cufflinks 0.366        
cufflinks 0.86        
cufflinks 2.389       High
cufflinks 0.009     Low Low
cufflinks 2.031        
cufflinks 3.331       High
cufflinks 0.018     Low Low
cufflinks 1.97        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain