Gene : Glyma.06G200100 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR19305 - SYNAPTOSOMAL ASSOCIATED PROTEIN Genomic Order:  2001
Name:  ? Glyma.06G200100 Secondary Identifier:  ? PAC:30552184
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G200100 0.5kb upstream 0.5kb upstream 3016 true Chr06: 18322664-18325679 Glycine max
Glyma.06G200100 0.5kb upstream 0.5kb upstream 500 false Chr06: 18325180-18325679 Glycine max
Glyma.06G200100 0.5kb downstream 0.5kb downstream 3016 true Chr06: 18322164-18325179 Glycine max
Glyma.06G200100 0.5kb downstream 0.5kb downstream 500 false Chr06: 18322164-18322663 Glycine max
Glyma.06G200100 1.0kb upstream 1.0kb upstream 3516 true Chr06: 18322664-18326179 Glycine max
Glyma.06G200100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18325180-18326179 Glycine max
Glyma.06G200100 1.0kb downstream 1.0kb downstream 3516 true Chr06: 18321664-18325179 Glycine max
Glyma.06G200100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 18321664-18322663 Glycine max
Glyma.06G200100 2.0kb upstream 2.0kb upstream 4516 true Chr06: 18322664-18327179 Glycine max
Glyma.06G200100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18325180-18327179 Glycine max
Glyma.06G200100 2.0kb downstream 2.0kb downstream 4516 true Chr06: 18320664-18325179 Glycine max
Glyma.06G200100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 18320664-18322663 Glycine max
Glyma.06G200100 5.0kb upstream 5.0kb upstream 7516 true Chr06: 18322664-18330179 Glycine max
Glyma.06G200100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18325180-18330179 Glycine max
Glyma.06G200100 5.0kb downstream 5.0kb downstream 7516 true Chr06: 18317664-18325179 Glycine max
Glyma.06G200100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 18317664-18322663 Glycine max
Glyma.06G200100 10.0kb upstream 10.0kb upstream 12516 true Chr06: 18322664-18335179 Glycine max
Glyma.06G200100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18325180-18335179 Glycine max
Glyma.06G200100 10.0kb downstream 10.0kb downstream 12516 true Chr06: 18312664-18325179 Glycine max
Glyma.06G200100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 18312664-18322663 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297446 5265 Fabidae View MSA
124069233 5270 Rosid View MSA
123745951 5271 Pentapetalae View MSA
122796965 5272 Eudicot View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.4689 0.0 80.2841    
cufflinks 9.01545 0.0 38.0964    
cufflinks 12.8325 0.0 50.8336    
cufflinks 7.86722 0.0 38.2244    
cufflinks 18.4165 0.0 77.2208    
cufflinks 95.5928 0.0 475.435 High High
cufflinks 5.90812 0.0 28.0515   Low
cufflinks 13.9346 0.0 54.5471    
cufflinks 15.3434 0.0 64.1996    
cufflinks 4.64        
cufflinks 13.311     High High
cufflinks 1.953        
cufflinks 5.738        
cufflinks 2.541        
cufflinks 3.781        
cufflinks 2.296        
cufflinks 23.698     High High
cufflinks 1.515       Low
cufflinks 1.887        
cufflinks 1.922        
cufflinks 8.649     High  
cufflinks 2.096        
cufflinks 2.474        
cufflinks 12.529     High High
cufflinks 1.854        
cufflinks 14.197     High High

0 Strain