Gene : Glyma.06G250100 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10742:SF210 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 Genomic Order:  2501
Name:  ? Glyma.06G250100 Secondary Identifier:  ? PAC:30549420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6441 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G250100 0.5kb upstream 0.5kb upstream 5641 true Chr06: 42299082-42304722 Glycine max
Glyma.06G250100 0.5kb upstream 0.5kb upstream 500 false Chr06: 42299082-42299581 Glycine max
Glyma.06G250100 0.5kb downstream 0.5kb downstream 5641 true Chr06: 42299582-42305222 Glycine max
Glyma.06G250100 0.5kb downstream 0.5kb downstream 500 false Chr06: 42304723-42305222 Glycine max
Glyma.06G250100 1.0kb upstream 1.0kb upstream 6141 true Chr06: 42298582-42304722 Glycine max
Glyma.06G250100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 42298582-42299581 Glycine max
Glyma.06G250100 1.0kb downstream 1.0kb downstream 6141 true Chr06: 42299582-42305722 Glycine max
Glyma.06G250100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 42304723-42305722 Glycine max
Glyma.06G250100 2.0kb upstream 2.0kb upstream 7141 true Chr06: 42297582-42304722 Glycine max
Glyma.06G250100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 42297582-42299581 Glycine max
Glyma.06G250100 2.0kb downstream 2.0kb downstream 7141 true Chr06: 42299582-42306722 Glycine max
Glyma.06G250100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 42304723-42306722 Glycine max
Glyma.06G250100 5.0kb upstream 5.0kb upstream 10141 true Chr06: 42294582-42304722 Glycine max
Glyma.06G250100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 42294582-42299581 Glycine max
Glyma.06G250100 5.0kb downstream 5.0kb downstream 10141 true Chr06: 42299582-42309722 Glycine max
Glyma.06G250100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 42304723-42309722 Glycine max
Glyma.06G250100 10.0kb upstream 10.0kb upstream 15141 true Chr06: 42289582-42304722 Glycine max
Glyma.06G250100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 42289582-42299581 Glycine max
Glyma.06G250100 10.0kb downstream 10.0kb downstream 15141 true Chr06: 42299582-42314722 Glycine max
Glyma.06G250100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 42304723-42314722 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300962 5265 Fabidae View MSA
124065563 5270 Rosid View MSA
123738735 5271 Pentapetalae View MSA
122791879 5272 Eudicot View MSA
122041755 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.24846 0.0 16.8303   High
cufflinks 4.98992 0.0 13.6146    
cufflinks 4.38014 0.0 12.0203    
cufflinks 3.78363 0.0 10.5403   Low
cufflinks 6.85929 0.0 18.4126   High
cufflinks 3.33814 0.0 9.41047   Low
cufflinks 5.58213 0.0 15.1173    
cufflinks 5.22617 0.0 14.2174    
cufflinks 4.42528 0.0 12.1687    
cufflinks 4.132        
cufflinks 2.739       Low
cufflinks 4.493        
cufflinks 6.48        
cufflinks 7.663     High High
cufflinks 2.376       Low
cufflinks 6.624        
cufflinks 2.652       Low
cufflinks 4.466        
cufflinks 5.508        
cufflinks 6.843        
cufflinks 2.736       Low
cufflinks 6.962       High
cufflinks 7.524     High High
cufflinks 3.487        
cufflinks 6.228        
cufflinks 2.812       Low

0 Strain