Gene : Glyma.06G236200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33398:SF2 - 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC Genomic Order:  2362
Name:  ? Glyma.06G236200 Secondary Identifier:  ? PAC:30553170
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G236200 0.5kb upstream 0.5kb upstream 3658 true Chr06: 38421150-38424807 Glycine max
Glyma.06G236200 0.5kb upstream 0.5kb upstream 500 false Chr06: 38421150-38421649 Glycine max
Glyma.06G236200 0.5kb downstream 0.5kb downstream 3658 true Chr06: 38421650-38425307 Glycine max
Glyma.06G236200 0.5kb downstream 0.5kb downstream 500 false Chr06: 38424808-38425307 Glycine max
Glyma.06G236200 1.0kb upstream 1.0kb upstream 4158 true Chr06: 38420650-38424807 Glycine max
Glyma.06G236200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 38420650-38421649 Glycine max
Glyma.06G236200 1.0kb downstream 1.0kb downstream 4158 true Chr06: 38421650-38425807 Glycine max
Glyma.06G236200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 38424808-38425807 Glycine max
Glyma.06G236200 2.0kb upstream 2.0kb upstream 5158 true Chr06: 38419650-38424807 Glycine max
Glyma.06G236200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 38419650-38421649 Glycine max
Glyma.06G236200 2.0kb downstream 2.0kb downstream 5158 true Chr06: 38421650-38426807 Glycine max
Glyma.06G236200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 38424808-38426807 Glycine max
Glyma.06G236200 5.0kb upstream 5.0kb upstream 8158 true Chr06: 38416650-38424807 Glycine max
Glyma.06G236200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 38416650-38421649 Glycine max
Glyma.06G236200 5.0kb downstream 5.0kb downstream 8158 true Chr06: 38421650-38429807 Glycine max
Glyma.06G236200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 38424808-38429807 Glycine max
Glyma.06G236200 10.0kb upstream 10.0kb upstream 13158 true Chr06: 38411650-38424807 Glycine max
Glyma.06G236200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 38411650-38421649 Glycine max
Glyma.06G236200 10.0kb downstream 10.0kb downstream 13158 true Chr06: 38421650-38434807 Glycine max
Glyma.06G236200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 38424808-38434807 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027102 5273 Angiosperm View MSA
122306979 5265 Fabidae View MSA
124065268 5270 Rosid View MSA
123738976 5271 Pentapetalae View MSA
122785943 5272 Eudicot View MSA
121345926 5274 Embryophyte View MSA
123425445 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.4584 0.0 157.892 High High
cufflinks 48.3257 0.0 147.108 High High
cufflinks 14.7737 0.0 47.3571    
cufflinks 19.5955 0.0 59.8515    
cufflinks 11.6636 0.0 38.684    
cufflinks 12.8528 0.0 41.9525    
cufflinks 13.4682 0.0 43.6507    
cufflinks 20.8202 0.0 63.3416    
cufflinks 8.93724 0.0 31.772   Low
cufflinks 8.034     High  
cufflinks 1.556       Low
cufflinks 6.01        
cufflinks 2.548        
cufflinks 2.653        
cufflinks 2.141        
cufflinks 45.843     High High
cufflinks 1.344       Low
cufflinks 6.94        
cufflinks 11.186     High  
cufflinks 50.642     High High
cufflinks 1.674        
cufflinks 40.561     High High
cufflinks 40.707     High High
cufflinks 1.601        
cufflinks 48.57     High High
cufflinks 1.438       Low

0 Strain