Gene : Glyma.06G277400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Genomic Order:  2774
Name:  ? Glyma.06G277400 Secondary Identifier:  ? PAC:30553218
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G277400 0.5kb upstream 0.5kb upstream 4329 true Chr06: 46861811-46866139 Glycine max
Glyma.06G277400 0.5kb upstream 0.5kb upstream 500 false Chr06: 46865640-46866139 Glycine max
Glyma.06G277400 0.5kb downstream 0.5kb downstream 4329 true Chr06: 46861311-46865639 Glycine max
Glyma.06G277400 0.5kb downstream 0.5kb downstream 500 false Chr06: 46861311-46861810 Glycine max
Glyma.06G277400 1.0kb upstream 1.0kb upstream 4829 true Chr06: 46861811-46866639 Glycine max
Glyma.06G277400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 46865640-46866639 Glycine max
Glyma.06G277400 1.0kb downstream 1.0kb downstream 4829 true Chr06: 46860811-46865639 Glycine max
Glyma.06G277400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 46860811-46861810 Glycine max
Glyma.06G277400 2.0kb upstream 2.0kb upstream 5829 true Chr06: 46861811-46867639 Glycine max
Glyma.06G277400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 46865640-46867639 Glycine max
Glyma.06G277400 2.0kb downstream 2.0kb downstream 5829 true Chr06: 46859811-46865639 Glycine max
Glyma.06G277400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 46859811-46861810 Glycine max
Glyma.06G277400 5.0kb upstream 5.0kb upstream 8829 true Chr06: 46861811-46870639 Glycine max
Glyma.06G277400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 46865640-46870639 Glycine max
Glyma.06G277400 5.0kb downstream 5.0kb downstream 8829 true Chr06: 46856811-46865639 Glycine max
Glyma.06G277400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 46856811-46861810 Glycine max
Glyma.06G277400 10.0kb upstream 10.0kb upstream 13829 true Chr06: 46861811-46875639 Glycine max
Glyma.06G277400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 46865640-46875639 Glycine max
Glyma.06G277400 10.0kb downstream 10.0kb downstream 13829 true Chr06: 46851811-46865639 Glycine max
Glyma.06G277400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 46851811-46861810 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122309730 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0202247 0.0 0.0914668 Low Low
cufflinks 7.36254 0.0 21.6774    
cufflinks 0.713832 0.0 2.65633    
cufflinks 9.46252 0.0 26.9348    
cufflinks 3.30375 0.0 10.8327    
cufflinks 3.12157 0.0 10.3183    
cufflinks 3.55738 0.0 11.5515    
cufflinks 74.6582 0.0 209.208 High High
cufflinks 3.3422 0.0 10.9449    
cufflinks 5.801       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.118     Low  
cufflinks 0.13        
cufflinks 0.113        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low Low
cufflinks 0.48        
cufflinks 0.039     Low  
cufflinks 1.139       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low Low

0 Strain