Gene : Glyma.06G324500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Genomic Order:  3245
Name:  ? Glyma.06G324500 Secondary Identifier:  ? PAC:30553811
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G324500 0.5kb upstream 0.5kb upstream 10060 true Chr06: 51224121-51234180 Glycine max
Glyma.06G324500 0.5kb upstream 0.5kb upstream 500 false Chr06: 51224121-51224620 Glycine max
Glyma.06G324500 0.5kb downstream 0.5kb downstream 10060 true Chr06: 51224621-51234680 Glycine max
Glyma.06G324500 0.5kb downstream 0.5kb downstream 500 false Chr06: 51234181-51234680 Glycine max
Glyma.06G324500 1.0kb upstream 1.0kb upstream 10560 true Chr06: 51223621-51234180 Glycine max
Glyma.06G324500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 51223621-51224620 Glycine max
Glyma.06G324500 1.0kb downstream 1.0kb downstream 10560 true Chr06: 51224621-51235180 Glycine max
Glyma.06G324500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 51234181-51235180 Glycine max
Glyma.06G324500 2.0kb upstream 2.0kb upstream 11560 true Chr06: 51222621-51234180 Glycine max
Glyma.06G324500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 51222621-51224620 Glycine max
Glyma.06G324500 2.0kb downstream 2.0kb downstream 11560 true Chr06: 51224621-51236180 Glycine max
Glyma.06G324500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 51234181-51236180 Glycine max
Glyma.06G324500 5.0kb upstream 5.0kb upstream 14560 true Chr06: 51219621-51234180 Glycine max
Glyma.06G324500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 51219621-51224620 Glycine max
Glyma.06G324500 5.0kb downstream 5.0kb downstream 14560 true Chr06: 51224621-51239180 Glycine max
Glyma.06G324500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 51234181-51239180 Glycine max
Glyma.06G324500 10.0kb upstream 10.0kb upstream 19560 true Chr06: 51214621-51234180 Glycine max
Glyma.06G324500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 51214621-51224620 Glycine max
Glyma.06G324500 10.0kb downstream 10.0kb downstream 19560 true Chr06: 51224621-51244180 Glycine max
Glyma.06G324500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 51234181-51244180 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122307541 5265 Fabidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.40016 0.0 33.6146    
cufflinks 6.92966 0.0 25.4214   Low
cufflinks 14.5452 0.0 51.5284   High
cufflinks 6.63404 0.0 24.7706   Low
cufflinks 8.88326 0.0 32.1168    
cufflinks 10.0427 0.0 35.8316    
cufflinks 8.29946 0.0 30.092    
cufflinks 8.92915 0.0 32.6495    
cufflinks 8.39399 0.0 30.3002    
cufflinks 1.256       Low
cufflinks 2.732       High
cufflinks 1.726        
cufflinks 1.772        
cufflinks 1.618        
cufflinks 3.199       High
cufflinks 2.086        
cufflinks 1.458       Low
cufflinks 1.462       Low
cufflinks 1.796        
cufflinks 2.302        
cufflinks 2.464        
cufflinks 2.248        
cufflinks 1.717        
cufflinks 2.726       High
cufflinks 2.158        
cufflinks 2.169        

0 Strain