Gene : Glyma.07G001600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR26312:SF0 - TETRATRICOPEPTIDE REPEAT PROTEIN 5 Genomic Order:  16
Name:  ? Glyma.07G001600 Secondary Identifier:  ? PAC:30495240
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G001600 0.5kb upstream 0.5kb upstream 6301 true Chr07: 157128-163428 Glycine max
Glyma.07G001600 0.5kb upstream 0.5kb upstream 500 false Chr07: 157128-157627 Glycine max
Glyma.07G001600 0.5kb downstream 0.5kb downstream 6301 true Chr07: 157628-163928 Glycine max
Glyma.07G001600 0.5kb downstream 0.5kb downstream 500 false Chr07: 163429-163928 Glycine max
Glyma.07G001600 1.0kb upstream 1.0kb upstream 6801 true Chr07: 156628-163428 Glycine max
Glyma.07G001600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 156628-157627 Glycine max
Glyma.07G001600 1.0kb downstream 1.0kb downstream 6801 true Chr07: 157628-164428 Glycine max
Glyma.07G001600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 163429-164428 Glycine max
Glyma.07G001600 2.0kb upstream 2.0kb upstream 7801 true Chr07: 155628-163428 Glycine max
Glyma.07G001600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 155628-157627 Glycine max
Glyma.07G001600 2.0kb downstream 2.0kb downstream 7801 true Chr07: 157628-165428 Glycine max
Glyma.07G001600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 163429-165428 Glycine max
Glyma.07G001600 5.0kb upstream 5.0kb upstream 10801 true Chr07: 152628-163428 Glycine max
Glyma.07G001600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 152628-157627 Glycine max
Glyma.07G001600 5.0kb downstream 5.0kb downstream 10801 true Chr07: 157628-168428 Glycine max
Glyma.07G001600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 163429-168428 Glycine max
Glyma.07G001600 10.0kb upstream 10.0kb upstream 15801 true Chr07: 147628-163428 Glycine max
Glyma.07G001600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 147628-157627 Glycine max
Glyma.07G001600 10.0kb downstream 10.0kb downstream 15801 true Chr07: 157628-173428 Glycine max
Glyma.07G001600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 163429-173428 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041405 5273 Angiosperm View MSA
122309503 5265 Fabidae View MSA
124065158 5270 Rosid View MSA
123747487 5271 Pentapetalae View MSA
122792226 5272 Eudicot View MSA
121343833 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.53125 0.0 26.0106   High
cufflinks 5.15588 0.0 14.8943    
cufflinks 3.16038 0.0 9.69519    
cufflinks 4.45199 0.0 13.0864    
cufflinks 2.18425 0.0 7.13558    
cufflinks 1.46818 0.0 5.02606   Low
cufflinks 3.58762 0.0 10.9343    
cufflinks 3.87128 0.0 11.6138    
cufflinks 1.9323 0.0 6.39699    
cufflinks 1.52        
cufflinks 0.376       Low
cufflinks 1.242        
cufflinks 0.869        
cufflinks 0.915        
cufflinks 0.476       Low
cufflinks 3.252       High
cufflinks 0.584        
cufflinks 2.085        
cufflinks 1.808        
cufflinks 3.393       High
cufflinks 0.386       Low
cufflinks 3.697       High
cufflinks 2.874       High
cufflinks 0.51       Low
cufflinks 3.936       High
cufflinks 0.487       Low

0 Strain