Gene : Glyma.07G049500 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG0114//KOG0131//KOG0146//KOG4206 - Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein ETR-3 (RRM superfamily) // Spliceosomal protein snRNP-U1A/U2B Genomic Order:  495
Name:  ? Glyma.07G049500 Secondary Identifier:  ? PAC:30493283
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G049500 0.5kb upstream 0.5kb upstream 3196 true Chr07: 4207908-4211103 Glycine max
Glyma.07G049500 0.5kb upstream 0.5kb upstream 500 false Chr07: 4210604-4211103 Glycine max
Glyma.07G049500 0.5kb downstream 0.5kb downstream 3196 true Chr07: 4207408-4210603 Glycine max
Glyma.07G049500 0.5kb downstream 0.5kb downstream 500 false Chr07: 4207408-4207907 Glycine max
Glyma.07G049500 1.0kb upstream 1.0kb upstream 3696 true Chr07: 4207908-4211603 Glycine max
Glyma.07G049500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4210604-4211603 Glycine max
Glyma.07G049500 1.0kb downstream 1.0kb downstream 3696 true Chr07: 4206908-4210603 Glycine max
Glyma.07G049500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4206908-4207907 Glycine max
Glyma.07G049500 2.0kb upstream 2.0kb upstream 4696 true Chr07: 4207908-4212603 Glycine max
Glyma.07G049500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4210604-4212603 Glycine max
Glyma.07G049500 2.0kb downstream 2.0kb downstream 4696 true Chr07: 4205908-4210603 Glycine max
Glyma.07G049500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4205908-4207907 Glycine max
Glyma.07G049500 5.0kb upstream 5.0kb upstream 7696 true Chr07: 4207908-4215603 Glycine max
Glyma.07G049500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4210604-4215603 Glycine max
Glyma.07G049500 5.0kb downstream 5.0kb downstream 7696 true Chr07: 4202908-4210603 Glycine max
Glyma.07G049500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4202908-4207907 Glycine max
Glyma.07G049500 10.0kb upstream 10.0kb upstream 12696 true Chr07: 4207908-4220603 Glycine max
Glyma.07G049500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4210604-4220603 Glycine max
Glyma.07G049500 10.0kb downstream 10.0kb downstream 12696 true Chr07: 4197908-4210603 Glycine max
Glyma.07G049500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4197908-4207907 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312243 5265 Fabidae View MSA
124069187 5270 Rosid View MSA
123741814 5271 Pentapetalae View MSA
122770132 5272 Eudicot View MSA
122046053 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310543 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.4741 0.0 18.7511   High
cufflinks 4.79663 0.0 14.4495   High
cufflinks 2.03368 0.0 6.87214    
cufflinks 2.68224 0.0 8.77375    
cufflinks 0.698669 0.0 2.57367   Low
cufflinks 0.950402 0.0 3.43586    
cufflinks 1.9258 0.0 6.59009    
cufflinks 1.67075 0.0 5.77575    
cufflinks 0.713626 0.0 2.62331   Low
cufflinks 1.049        
cufflinks 0.222       Low
cufflinks 1.596        
cufflinks 0.351        
cufflinks 0.441        
cufflinks 0.247       Low
cufflinks 6.624       High
cufflinks 0.32        
cufflinks 1.102        
cufflinks 2.411        
cufflinks 9.47     High High
cufflinks 0.387        
cufflinks 8.077     High High
cufflinks 8.215     High High
cufflinks 0.221       Low
cufflinks 9.647     High High
cufflinks 0.245       Low

0 Strain