Gene : Glyma.07G049600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  496
Name:  ? Glyma.07G049600 Secondary Identifier:  ? PAC:30494338
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5173 Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PYRUVDEHYD-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G049600 0.5kb upstream 0.5kb upstream 4062 true Chr07: 4211750-4215811 Glycine max
Glyma.07G049600 0.5kb upstream 0.5kb upstream 500 false Chr07: 4215312-4215811 Glycine max
Glyma.07G049600 0.5kb downstream 0.5kb downstream 4062 true Chr07: 4211250-4215311 Glycine max
Glyma.07G049600 0.5kb downstream 0.5kb downstream 500 false Chr07: 4211250-4211749 Glycine max
Glyma.07G049600 1.0kb upstream 1.0kb upstream 4562 true Chr07: 4211750-4216311 Glycine max
Glyma.07G049600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4215312-4216311 Glycine max
Glyma.07G049600 1.0kb downstream 1.0kb downstream 4562 true Chr07: 4210750-4215311 Glycine max
Glyma.07G049600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4210750-4211749 Glycine max
Glyma.07G049600 2.0kb upstream 2.0kb upstream 5562 true Chr07: 4211750-4217311 Glycine max
Glyma.07G049600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4215312-4217311 Glycine max
Glyma.07G049600 2.0kb downstream 2.0kb downstream 5562 true Chr07: 4209750-4215311 Glycine max
Glyma.07G049600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4209750-4211749 Glycine max
Glyma.07G049600 5.0kb upstream 5.0kb upstream 8562 true Chr07: 4211750-4220311 Glycine max
Glyma.07G049600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4215312-4220311 Glycine max
Glyma.07G049600 5.0kb downstream 5.0kb downstream 8562 true Chr07: 4206750-4215311 Glycine max
Glyma.07G049600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4206750-4211749 Glycine max
Glyma.07G049600 10.0kb upstream 10.0kb upstream 13562 true Chr07: 4211750-4225311 Glycine max
Glyma.07G049600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4215312-4225311 Glycine max
Glyma.07G049600 10.0kb downstream 10.0kb downstream 13562 true Chr07: 4201750-4215311 Glycine max
Glyma.07G049600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4201750-4211749 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309169 5265 Fabidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.4622 0.0 60.1997 High  
cufflinks 22.4799 0.0 60.2254 High  
cufflinks 8.71925 0.0 23.7681   Low
cufflinks 22.5593 0.0 60.4562 High  
cufflinks 34.5102 0.0 94.6726 High  
cufflinks 20.0339 0.0 53.5358    
cufflinks 47.6356 0.0 135.01 High High
cufflinks 20.4435 0.0 54.6677    
cufflinks 20.9892 0.0 56.1469 High  
cufflinks 18.627     High  
cufflinks 1.388       Low
cufflinks 8.922     High  
cufflinks 28.111     High  
cufflinks 39.503     High  
cufflinks 3.117       Low
cufflinks 67.804     High High
cufflinks 7.647     High  
cufflinks 18.394     High  
cufflinks 18.977     High  
cufflinks 84.637     High High
cufflinks 3.298       Low
cufflinks 46.196     High  
cufflinks 28.753     High  
cufflinks 1.668       Low
cufflinks 95.487     High High
cufflinks 5.802        

0 Strain