Gene : Glyma.07G041800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12780 - RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED Genomic Order:  418
Name:  ? Glyma.07G041800 Secondary Identifier:  ? PAC:30492981
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G041800 0.5kb upstream 0.5kb upstream 2126 true Chr07: 3480699-3482824 Glycine max
Glyma.07G041800 0.5kb upstream 0.5kb upstream 500 false Chr07: 3480699-3481198 Glycine max
Glyma.07G041800 0.5kb downstream 0.5kb downstream 2126 true Chr07: 3481199-3483324 Glycine max
Glyma.07G041800 0.5kb downstream 0.5kb downstream 500 false Chr07: 3482825-3483324 Glycine max
Glyma.07G041800 1.0kb upstream 1.0kb upstream 2626 true Chr07: 3480199-3482824 Glycine max
Glyma.07G041800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3480199-3481198 Glycine max
Glyma.07G041800 1.0kb downstream 1.0kb downstream 2626 true Chr07: 3481199-3483824 Glycine max
Glyma.07G041800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3482825-3483824 Glycine max
Glyma.07G041800 2.0kb upstream 2.0kb upstream 3626 true Chr07: 3479199-3482824 Glycine max
Glyma.07G041800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3479199-3481198 Glycine max
Glyma.07G041800 2.0kb downstream 2.0kb downstream 3626 true Chr07: 3481199-3484824 Glycine max
Glyma.07G041800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3482825-3484824 Glycine max
Glyma.07G041800 5.0kb upstream 5.0kb upstream 6626 true Chr07: 3476199-3482824 Glycine max
Glyma.07G041800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3476199-3481198 Glycine max
Glyma.07G041800 5.0kb downstream 5.0kb downstream 6626 true Chr07: 3481199-3487824 Glycine max
Glyma.07G041800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3482825-3487824 Glycine max
Glyma.07G041800 10.0kb upstream 10.0kb upstream 11626 true Chr07: 3471199-3482824 Glycine max
Glyma.07G041800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3471199-3481198 Glycine max
Glyma.07G041800 10.0kb downstream 10.0kb downstream 11626 true Chr07: 3481199-3492824 Glycine max
Glyma.07G041800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3482825-3492824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254380 5265 Fabidae View MSA
123996565 5270 Rosid View MSA
123571008 5271 Pentapetalae View MSA
122605740 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.848336 0.0 3.08926   Low
cufflinks 2.55383 0.0 8.42185    
cufflinks 0.810117 0.0 2.95576   Low
cufflinks 2.05224 0.0 6.94164    
cufflinks 2.62384 0.0 8.61517    
cufflinks 3.6146 0.0 11.3578   High
cufflinks 2.49706 0.0 8.25241    
cufflinks 2.21973 0.0 7.43617    
cufflinks 2.27657 0.0 7.60666    
cufflinks 6.309       High
cufflinks 1.489        
cufflinks 2.233        
cufflinks 4.789       High
cufflinks 5.24       High
cufflinks 1.85        
cufflinks 2.163        
cufflinks 2.275        
cufflinks 4.126       High
cufflinks 3.144        
cufflinks 1.988        
cufflinks 1.68        
cufflinks 1.595        
cufflinks 1.975        
cufflinks 1.178       Low
cufflinks 1.84        
cufflinks 1.771        

0 Strain