Gene : Glyma.07G042400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21136//PTHR21136:SF89 - SNARE PROTEINS Genomic Order:  424
Name:  ? Glyma.07G042400 Secondary Identifier:  ? PAC:30493291
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G042400 0.5kb upstream 0.5kb upstream 4506 true Chr07: 3519834-3524339 Glycine max
Glyma.07G042400 0.5kb upstream 0.5kb upstream 500 false Chr07: 3523840-3524339 Glycine max
Glyma.07G042400 0.5kb downstream 0.5kb downstream 4506 true Chr07: 3519334-3523839 Glycine max
Glyma.07G042400 0.5kb downstream 0.5kb downstream 500 false Chr07: 3519334-3519833 Glycine max
Glyma.07G042400 1.0kb upstream 1.0kb upstream 5006 true Chr07: 3519834-3524839 Glycine max
Glyma.07G042400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3523840-3524839 Glycine max
Glyma.07G042400 1.0kb downstream 1.0kb downstream 5006 true Chr07: 3518834-3523839 Glycine max
Glyma.07G042400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3518834-3519833 Glycine max
Glyma.07G042400 2.0kb upstream 2.0kb upstream 6006 true Chr07: 3519834-3525839 Glycine max
Glyma.07G042400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3523840-3525839 Glycine max
Glyma.07G042400 2.0kb downstream 2.0kb downstream 6006 true Chr07: 3517834-3523839 Glycine max
Glyma.07G042400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3517834-3519833 Glycine max
Glyma.07G042400 5.0kb upstream 5.0kb upstream 9006 true Chr07: 3519834-3528839 Glycine max
Glyma.07G042400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3523840-3528839 Glycine max
Glyma.07G042400 5.0kb downstream 5.0kb downstream 9006 true Chr07: 3514834-3523839 Glycine max
Glyma.07G042400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3514834-3519833 Glycine max
Glyma.07G042400 10.0kb upstream 10.0kb upstream 14006 true Chr07: 3519834-3533839 Glycine max
Glyma.07G042400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3523840-3533839 Glycine max
Glyma.07G042400 10.0kb downstream 10.0kb downstream 14006 true Chr07: 3509834-3523839 Glycine max
Glyma.07G042400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3509834-3519833 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300389 5265 Fabidae View MSA
124065843 5270 Rosid View MSA
123753791 5271 Pentapetalae View MSA
122788214 5272 Eudicot View MSA
122046474 5273 Angiosperm View MSA
121346313 5274 Embryophyte View MSA
123424515 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.597 0.0 44.9249   Low
cufflinks 18.7775 0.0 50.4929    
cufflinks 20.2984 0.0 54.4272 High  
cufflinks 22.3556 0.0 59.7907 High  
cufflinks 28.9567 0.0 77.2554 High  
cufflinks 38.2025 0.0 102.42 High High
cufflinks 26.6149 0.0 71.0344 High  
cufflinks 26.4555 0.0 70.5891 High  
cufflinks 22.8248 0.0 61.0185 High  
cufflinks 8.454     High  
cufflinks 9.939     High  
cufflinks 5.559       Low
cufflinks 12.039     High High
cufflinks 13.771     High High
cufflinks 9.171     High  
cufflinks 7.067        
cufflinks 5.717       Low
cufflinks 6.841        
cufflinks 7.021        
cufflinks 7.601     High  
cufflinks 12.101     High High
cufflinks 6.916        
cufflinks 5.573       Low
cufflinks 11.44     High High
cufflinks 7.469     High  
cufflinks 10.332     High  

0 Strain