Gene : Glyma.07G042700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31008:SF3 - COP1-INTERACTING PROTEIN-RELATED PROTEIN-RELATED Genomic Order:  427
Name:  ? Glyma.07G042700 Secondary Identifier:  ? PAC:30492365
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G042700 0.5kb upstream 0.5kb upstream 9051 true Chr07: 3546338-3555388 Glycine max
Glyma.07G042700 0.5kb upstream 0.5kb upstream 500 false Chr07: 3554889-3555388 Glycine max
Glyma.07G042700 0.5kb downstream 0.5kb downstream 9051 true Chr07: 3545838-3554888 Glycine max
Glyma.07G042700 0.5kb downstream 0.5kb downstream 500 false Chr07: 3545838-3546337 Glycine max
Glyma.07G042700 1.0kb upstream 1.0kb upstream 9551 true Chr07: 3546338-3555888 Glycine max
Glyma.07G042700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3554889-3555888 Glycine max
Glyma.07G042700 1.0kb downstream 1.0kb downstream 9551 true Chr07: 3545338-3554888 Glycine max
Glyma.07G042700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3545338-3546337 Glycine max
Glyma.07G042700 2.0kb upstream 2.0kb upstream 10551 true Chr07: 3546338-3556888 Glycine max
Glyma.07G042700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3554889-3556888 Glycine max
Glyma.07G042700 2.0kb downstream 2.0kb downstream 10551 true Chr07: 3544338-3554888 Glycine max
Glyma.07G042700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3544338-3546337 Glycine max
Glyma.07G042700 5.0kb upstream 5.0kb upstream 13551 true Chr07: 3546338-3559888 Glycine max
Glyma.07G042700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3554889-3559888 Glycine max
Glyma.07G042700 5.0kb downstream 5.0kb downstream 13551 true Chr07: 3541338-3554888 Glycine max
Glyma.07G042700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3541338-3546337 Glycine max
Glyma.07G042700 10.0kb upstream 10.0kb upstream 18551 true Chr07: 3546338-3564888 Glycine max
Glyma.07G042700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3554889-3564888 Glycine max
Glyma.07G042700 10.0kb downstream 10.0kb downstream 18551 true Chr07: 3536338-3554888 Glycine max
Glyma.07G042700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3536338-3546337 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311279 5265 Fabidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.95946 0.0 38.778    
cufflinks 7.31374 0.0 40.559    
cufflinks 4.46822 0.0 24.0432   Low
cufflinks 8.58262 0.0 48.7587    
cufflinks 6.12661 0.0 30.2506    
cufflinks 4.8942 0.0 22.249   Low
cufflinks 11.5425 0.0 66.2321   High
cufflinks 7.18466 0.0 38.4886    
cufflinks 6.00599 0.0 30.6152    
cufflinks 0.588        
cufflinks 0.208       Low
cufflinks 0.632        
cufflinks 0.591        
cufflinks 0.661        
cufflinks 0.176       Low
cufflinks 0.626        
cufflinks 0.191       Low
cufflinks 0.836       High
cufflinks 0.804       High
cufflinks 0.544        
cufflinks 0.268        
cufflinks 0.585        
cufflinks 0.628        
cufflinks 0.276        
cufflinks 0.547        
cufflinks 0.271        

0 Strain