Gene : Glyma.07G039900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  399
Name:  ? Glyma.07G039900 Secondary Identifier:  ? PAC:30495102
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G039900 0.5kb upstream 0.5kb upstream 6978 true Chr07: 3288274-3295251 Glycine max
Glyma.07G039900 0.5kb upstream 0.5kb upstream 500 false Chr07: 3294752-3295251 Glycine max
Glyma.07G039900 0.5kb downstream 0.5kb downstream 6978 true Chr07: 3287774-3294751 Glycine max
Glyma.07G039900 0.5kb downstream 0.5kb downstream 500 false Chr07: 3287774-3288273 Glycine max
Glyma.07G039900 1.0kb upstream 1.0kb upstream 7478 true Chr07: 3288274-3295751 Glycine max
Glyma.07G039900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 3294752-3295751 Glycine max
Glyma.07G039900 1.0kb downstream 1.0kb downstream 7478 true Chr07: 3287274-3294751 Glycine max
Glyma.07G039900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 3287274-3288273 Glycine max
Glyma.07G039900 2.0kb upstream 2.0kb upstream 8478 true Chr07: 3288274-3296751 Glycine max
Glyma.07G039900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 3294752-3296751 Glycine max
Glyma.07G039900 2.0kb downstream 2.0kb downstream 8478 true Chr07: 3286274-3294751 Glycine max
Glyma.07G039900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 3286274-3288273 Glycine max
Glyma.07G039900 5.0kb upstream 5.0kb upstream 11478 true Chr07: 3288274-3299751 Glycine max
Glyma.07G039900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 3294752-3299751 Glycine max
Glyma.07G039900 5.0kb downstream 5.0kb downstream 11478 true Chr07: 3283274-3294751 Glycine max
Glyma.07G039900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 3283274-3288273 Glycine max
Glyma.07G039900 10.0kb upstream 10.0kb upstream 16478 true Chr07: 3288274-3304751 Glycine max
Glyma.07G039900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 3294752-3304751 Glycine max
Glyma.07G039900 10.0kb downstream 10.0kb downstream 16478 true Chr07: 3278274-3294751 Glycine max
Glyma.07G039900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 3278274-3288273 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300976 5265 Fabidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0122 0.0 32.169    
cufflinks 13.369 0.0 35.9364    
cufflinks 77.8274 0.0 267.443 High High
cufflinks 35.131 0.0 103.626 High  
cufflinks 19.6186 0.0 53.9781    
cufflinks 15.0389 0.0 40.6498    
cufflinks 12.1067 0.0 32.4313    
cufflinks 30.7449 0.0 89.189 High  
cufflinks 22.4067 0.0 62.5074 High  
cufflinks 46.095     High  
cufflinks 25.513     High  
cufflinks 46.693     High  
cufflinks 9.482     High  
cufflinks 5.33        
cufflinks 6.093     High  
cufflinks 4.138        
cufflinks 283.789     High High
cufflinks 16.967     High  
cufflinks 8.478     High  
cufflinks 2.729       Low
cufflinks 28.05     High  
cufflinks 3.582       Low
cufflinks 20.772     High  
cufflinks 22.552     High  
cufflinks 3.199       Low
cufflinks 96.481     High High

0 Strain