Gene : Glyma.07G080900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  809
Name:  ? Glyma.07G080900 Secondary Identifier:  ? PAC:30492707
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G080900 0.5kb upstream 0.5kb upstream 24947 true Chr07: 7380839-7405785 Glycine max
Glyma.07G080900 0.5kb upstream 0.5kb upstream 500 false Chr07: 7380839-7381338 Glycine max
Glyma.07G080900 0.5kb downstream 0.5kb downstream 24947 true Chr07: 7381339-7406285 Glycine max
Glyma.07G080900 0.5kb downstream 0.5kb downstream 500 false Chr07: 7405786-7406285 Glycine max
Glyma.07G080900 1.0kb upstream 1.0kb upstream 25447 true Chr07: 7380339-7405785 Glycine max
Glyma.07G080900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 7380339-7381338 Glycine max
Glyma.07G080900 1.0kb downstream 1.0kb downstream 25447 true Chr07: 7381339-7406785 Glycine max
Glyma.07G080900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 7405786-7406785 Glycine max
Glyma.07G080900 2.0kb upstream 2.0kb upstream 26447 true Chr07: 7379339-7405785 Glycine max
Glyma.07G080900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 7379339-7381338 Glycine max
Glyma.07G080900 2.0kb downstream 2.0kb downstream 26447 true Chr07: 7381339-7407785 Glycine max
Glyma.07G080900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 7405786-7407785 Glycine max
Glyma.07G080900 5.0kb upstream 5.0kb upstream 29447 true Chr07: 7376339-7405785 Glycine max
Glyma.07G080900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 7376339-7381338 Glycine max
Glyma.07G080900 5.0kb downstream 5.0kb downstream 29447 true Chr07: 7381339-7410785 Glycine max
Glyma.07G080900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 7405786-7410785 Glycine max
Glyma.07G080900 10.0kb upstream 10.0kb upstream 34447 true Chr07: 7371339-7405785 Glycine max
Glyma.07G080900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 7371339-7381338 Glycine max
Glyma.07G080900 10.0kb downstream 10.0kb downstream 34447 true Chr07: 7381339-7415785 Glycine max
Glyma.07G080900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 7405786-7415785 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311356 5265 Fabidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.62917 0.0 11.7018   High
cufflinks 2.57123 0.0 12.3086    
cufflinks 0.732735 0.0 3.30957    
cufflinks 0.151821 0.0 0.595966 Low Low
cufflinks 0.698297 0.0 3.22842    
cufflinks 2.41083 0.0 11.5562    
cufflinks 0.0269603 0.0 0.122891 Low Low
cufflinks 0.831458 0.0 4.97778    
cufflinks 1.90737 0.0 7.35945    
cufflinks 0.037     Low Low
cufflinks 0.254        
cufflinks 0.019     Low Low
cufflinks 0.065     Low  
cufflinks 0.025     Low Low
cufflinks 0.058        
cufflinks 0.324        
cufflinks 0.077        
cufflinks 0.03     Low Low
cufflinks 0.362       High
cufflinks 0.225        
cufflinks 0.278        
cufflinks 0.238        
cufflinks 0.17        
cufflinks 0.265        
cufflinks 0.348       High
cufflinks 0.176        

0 Strain