Gene : Glyma.07G141600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12483:SF24 - COPPER TRANSPORTER 1-RELATED Genomic Order:  1416
Name:  ? Glyma.07G141600 Secondary Identifier:  ? PAC:30492807
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G141600 0.5kb upstream 0.5kb upstream 920 true Chr07: 16788591-16789510 Glycine max
Glyma.07G141600 0.5kb upstream 0.5kb upstream 500 false Chr07: 16789011-16789510 Glycine max
Glyma.07G141600 0.5kb downstream 0.5kb downstream 920 true Chr07: 16788091-16789010 Glycine max
Glyma.07G141600 0.5kb downstream 0.5kb downstream 500 false Chr07: 16788091-16788590 Glycine max
Glyma.07G141600 1.0kb upstream 1.0kb upstream 1420 true Chr07: 16788591-16790010 Glycine max
Glyma.07G141600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 16789011-16790010 Glycine max
Glyma.07G141600 1.0kb downstream 1.0kb downstream 1420 true Chr07: 16787591-16789010 Glycine max
Glyma.07G141600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 16787591-16788590 Glycine max
Glyma.07G141600 2.0kb upstream 2.0kb upstream 2420 true Chr07: 16788591-16791010 Glycine max
Glyma.07G141600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 16789011-16791010 Glycine max
Glyma.07G141600 2.0kb downstream 2.0kb downstream 2420 true Chr07: 16786591-16789010 Glycine max
Glyma.07G141600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 16786591-16788590 Glycine max
Glyma.07G141600 5.0kb upstream 5.0kb upstream 5420 true Chr07: 16788591-16794010 Glycine max
Glyma.07G141600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 16789011-16794010 Glycine max
Glyma.07G141600 5.0kb downstream 5.0kb downstream 5420 true Chr07: 16783591-16789010 Glycine max
Glyma.07G141600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 16783591-16788590 Glycine max
Glyma.07G141600 10.0kb upstream 10.0kb upstream 10420 true Chr07: 16788591-16799010 Glycine max
Glyma.07G141600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 16789011-16799010 Glycine max
Glyma.07G141600 10.0kb downstream 10.0kb downstream 10420 true Chr07: 16778591-16789010 Glycine max
Glyma.07G141600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 16778591-16788590 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238646 5265 Fabidae Singleton cluster - no MSA
124073752 5270 Rosid View MSA
123753220 5271 Pentapetalae View MSA
122794741 5272 Eudicot View MSA
122045101 5273 Angiosperm View MSA
121351716 5274 Embryophyte View MSA
123428463 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.659779 0.0 2.60548   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.73363 0.0 2.88533   Low
cufflinks 5.5629 0.0 19.671   High
cufflinks 3.09737 0.0 11.4157    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.8096 0.0 6.85829    
cufflinks 5.89254 0.0 20.867   High
cufflinks 10.93     High High
cufflinks 2.554        
cufflinks 0.34       Low
cufflinks 22.585     High High
cufflinks 9.481     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.04        
cufflinks 3.113        
cufflinks 1.094        
cufflinks 0.981        
cufflinks 1.226        
cufflinks 6.147     High  
cufflinks 1.199        
cufflinks 0.828        
cufflinks 1.018        
cufflinks 0.942        
cufflinks 5.171        

0 Strain