Gene : Glyma.07G142000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE Genomic Order:  1420
Name:  ? Glyma.07G142000 Secondary Identifier:  ? PAC:30492695
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G142000 0.5kb upstream 0.5kb upstream 5737 true Chr07: 16871069-16876805 Glycine max
Glyma.07G142000 0.5kb upstream 0.5kb upstream 500 false Chr07: 16871069-16871568 Glycine max
Glyma.07G142000 0.5kb downstream 0.5kb downstream 5737 true Chr07: 16871569-16877305 Glycine max
Glyma.07G142000 0.5kb downstream 0.5kb downstream 500 false Chr07: 16876806-16877305 Glycine max
Glyma.07G142000 1.0kb upstream 1.0kb upstream 6237 true Chr07: 16870569-16876805 Glycine max
Glyma.07G142000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 16870569-16871568 Glycine max
Glyma.07G142000 1.0kb downstream 1.0kb downstream 6237 true Chr07: 16871569-16877805 Glycine max
Glyma.07G142000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 16876806-16877805 Glycine max
Glyma.07G142000 2.0kb upstream 2.0kb upstream 7237 true Chr07: 16869569-16876805 Glycine max
Glyma.07G142000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 16869569-16871568 Glycine max
Glyma.07G142000 2.0kb downstream 2.0kb downstream 7237 true Chr07: 16871569-16878805 Glycine max
Glyma.07G142000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 16876806-16878805 Glycine max
Glyma.07G142000 5.0kb upstream 5.0kb upstream 10237 true Chr07: 16866569-16876805 Glycine max
Glyma.07G142000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 16866569-16871568 Glycine max
Glyma.07G142000 5.0kb downstream 5.0kb downstream 10237 true Chr07: 16871569-16881805 Glycine max
Glyma.07G142000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 16876806-16881805 Glycine max
Glyma.07G142000 10.0kb upstream 10.0kb upstream 15237 true Chr07: 16861569-16876805 Glycine max
Glyma.07G142000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 16861569-16871568 Glycine max
Glyma.07G142000 10.0kb downstream 10.0kb downstream 15237 true Chr07: 16871569-16886805 Glycine max
Glyma.07G142000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 16876806-16886805 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297756 5265 Fabidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3018 0.0 27.6911    
cufflinks 11.2244 0.0 30.0757    
cufflinks 66.183 0.0 199.225 High High
cufflinks 6.42774 0.0 17.7553    
cufflinks 12.4499 0.0 33.2796    
cufflinks 16.0441 0.0 42.8143    
cufflinks 4.94746 0.0 14.0664   Low
cufflinks 5.65796 0.0 15.8232    
cufflinks 9.10923 0.0 24.6166    
cufflinks 4.636        
cufflinks 29.077     High High
cufflinks 8.047     High  
cufflinks 6.991        
cufflinks 6.584        
cufflinks 4.007       Low
cufflinks 4.681        
cufflinks 29.191     High High
cufflinks 9.4     High  
cufflinks 4.338        
cufflinks 4.829        
cufflinks 16.518     High  
cufflinks 6.062        
cufflinks 4.453        
cufflinks 23.129     High High
cufflinks 5.039        
cufflinks 19.697     High High

0 Strain