Gene : Glyma.07G129400 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG4772 - Predicted tRNA-splicing endonuclease subunit Genomic Order:  1294
Name:  ? Glyma.07G129400 Secondary Identifier:  ? PAC:30492378
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G129400 0.5kb upstream 0.5kb upstream 4043 true Chr07: 15397826-15401868 Glycine max
Glyma.07G129400 0.5kb upstream 0.5kb upstream 500 false Chr07: 15401369-15401868 Glycine max
Glyma.07G129400 0.5kb downstream 0.5kb downstream 4043 true Chr07: 15397326-15401368 Glycine max
Glyma.07G129400 0.5kb downstream 0.5kb downstream 500 false Chr07: 15397326-15397825 Glycine max
Glyma.07G129400 1.0kb upstream 1.0kb upstream 4543 true Chr07: 15397826-15402368 Glycine max
Glyma.07G129400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 15401369-15402368 Glycine max
Glyma.07G129400 1.0kb downstream 1.0kb downstream 4543 true Chr07: 15396826-15401368 Glycine max
Glyma.07G129400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 15396826-15397825 Glycine max
Glyma.07G129400 2.0kb upstream 2.0kb upstream 5543 true Chr07: 15397826-15403368 Glycine max
Glyma.07G129400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 15401369-15403368 Glycine max
Glyma.07G129400 2.0kb downstream 2.0kb downstream 5543 true Chr07: 15395826-15401368 Glycine max
Glyma.07G129400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 15395826-15397825 Glycine max
Glyma.07G129400 5.0kb upstream 5.0kb upstream 8543 true Chr07: 15397826-15406368 Glycine max
Glyma.07G129400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 15401369-15406368 Glycine max
Glyma.07G129400 5.0kb downstream 5.0kb downstream 8543 true Chr07: 15392826-15401368 Glycine max
Glyma.07G129400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 15392826-15397825 Glycine max
Glyma.07G129400 10.0kb upstream 10.0kb upstream 13543 true Chr07: 15397826-15411368 Glycine max
Glyma.07G129400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 15401369-15411368 Glycine max
Glyma.07G129400 10.0kb downstream 10.0kb downstream 13543 true Chr07: 15387826-15401368 Glycine max
Glyma.07G129400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 15387826-15397825 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122238702 5265 Fabidae Singleton cluster - no MSA
124066915 5270 Rosid View MSA
123737661 5271 Pentapetalae View MSA
122790630 5272 Eudicot View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.8768 0.0 25.1922   High
cufflinks 1.55641 0.0 9.216    
cufflinks 2.26762 0.0 11.666    
cufflinks 1.34699 0.0 7.10376    
cufflinks 1.61188 0.0 9.69522    
cufflinks 1.02878 0.0 6.6242   Low
cufflinks 2.2632 0.0 10.1408    
cufflinks 1.06948 0.0 5.88766   Low
cufflinks 2.0 0.0 10.8532    
cufflinks 0.184       Low
cufflinks 2.527       High
cufflinks 0.536        
cufflinks 0.277        
cufflinks 0.443        
cufflinks 1.231        
cufflinks 0.518        
cufflinks 0.15       Low
cufflinks 0.417        
cufflinks 0.588        
cufflinks 0.504        
cufflinks 3.181       High
cufflinks 0.473        
cufflinks 0.389        
cufflinks 2.273       High
cufflinks 0.482        
cufflinks 0.544        

0 Strain