Gene : Glyma.07G128600 G. max Wm82.a2.v1
Defline:  (1 of 8) PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1286
Name:  ? Glyma.07G128600 Secondary Identifier:  ? PAC:30493973
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G128600 0.5kb upstream 0.5kb upstream 2403 true Chr07: 15350391-15352793 Glycine max
Glyma.07G128600 0.5kb upstream 0.5kb upstream 500 false Chr07: 15352294-15352793 Glycine max
Glyma.07G128600 0.5kb downstream 0.5kb downstream 2403 true Chr07: 15349891-15352293 Glycine max
Glyma.07G128600 0.5kb downstream 0.5kb downstream 500 false Chr07: 15349891-15350390 Glycine max
Glyma.07G128600 1.0kb upstream 1.0kb upstream 2903 true Chr07: 15350391-15353293 Glycine max
Glyma.07G128600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 15352294-15353293 Glycine max
Glyma.07G128600 1.0kb downstream 1.0kb downstream 2903 true Chr07: 15349391-15352293 Glycine max
Glyma.07G128600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 15349391-15350390 Glycine max
Glyma.07G128600 2.0kb upstream 2.0kb upstream 3903 true Chr07: 15350391-15354293 Glycine max
Glyma.07G128600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 15352294-15354293 Glycine max
Glyma.07G128600 2.0kb downstream 2.0kb downstream 3903 true Chr07: 15348391-15352293 Glycine max
Glyma.07G128600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 15348391-15350390 Glycine max
Glyma.07G128600 5.0kb upstream 5.0kb upstream 6903 true Chr07: 15350391-15357293 Glycine max
Glyma.07G128600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 15352294-15357293 Glycine max
Glyma.07G128600 5.0kb downstream 5.0kb downstream 6903 true Chr07: 15345391-15352293 Glycine max
Glyma.07G128600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 15345391-15350390 Glycine max
Glyma.07G128600 10.0kb upstream 10.0kb upstream 11903 true Chr07: 15350391-15362293 Glycine max
Glyma.07G128600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 15352294-15362293 Glycine max
Glyma.07G128600 10.0kb downstream 10.0kb downstream 11903 true Chr07: 15340391-15352293 Glycine max
Glyma.07G128600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 15340391-15350390 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299810 5265 Fabidae View MSA
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.46875 0.0 20.5049   High
cufflinks 4.22399 0.0 12.3088    
cufflinks 3.35937 0.0 10.0686    
cufflinks 2.85035 0.0 8.75968    
cufflinks 1.22431 0.0 4.20816    
cufflinks 0.563458 0.0 2.05385   Low
cufflinks 1.44765 0.0 4.88783    
cufflinks 3.14219 0.0 9.52525    
cufflinks 1.14914 0.0 3.97155    
cufflinks 1.714        
cufflinks 0.503       Low
cufflinks 3.405        
cufflinks 0.621        
cufflinks 0.773        
cufflinks 0.574        
cufflinks 7.444     High High
cufflinks 0.538       Low
cufflinks 3.916        
cufflinks 3.444        
cufflinks 11.627     High High
cufflinks 0.495       Low
cufflinks 10.258     High High
cufflinks 7.512     High High
cufflinks 0.623        
cufflinks 9.023     High High
cufflinks 0.537       Low

0 Strain