Gene : Glyma.07G120200 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12694 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 Genomic Order:  1202
Name:  ? Glyma.07G120200 Secondary Identifier:  ? PAC:30495047
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G120200 0.5kb upstream 0.5kb upstream 1999 true Chr07: 13807052-13809050 Glycine max
Glyma.07G120200 0.5kb upstream 0.5kb upstream 500 false Chr07: 13807052-13807551 Glycine max
Glyma.07G120200 0.5kb downstream 0.5kb downstream 1999 true Chr07: 13807552-13809550 Glycine max
Glyma.07G120200 0.5kb downstream 0.5kb downstream 500 false Chr07: 13809051-13809550 Glycine max
Glyma.07G120200 1.0kb upstream 1.0kb upstream 2499 true Chr07: 13806552-13809050 Glycine max
Glyma.07G120200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 13806552-13807551 Glycine max
Glyma.07G120200 1.0kb downstream 1.0kb downstream 2499 true Chr07: 13807552-13810050 Glycine max
Glyma.07G120200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 13809051-13810050 Glycine max
Glyma.07G120200 2.0kb upstream 2.0kb upstream 3499 true Chr07: 13805552-13809050 Glycine max
Glyma.07G120200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 13805552-13807551 Glycine max
Glyma.07G120200 2.0kb downstream 2.0kb downstream 3499 true Chr07: 13807552-13811050 Glycine max
Glyma.07G120200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 13809051-13811050 Glycine max
Glyma.07G120200 5.0kb upstream 5.0kb upstream 6499 true Chr07: 13802552-13809050 Glycine max
Glyma.07G120200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 13802552-13807551 Glycine max
Glyma.07G120200 5.0kb downstream 5.0kb downstream 6499 true Chr07: 13807552-13814050 Glycine max
Glyma.07G120200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 13809051-13814050 Glycine max
Glyma.07G120200 10.0kb upstream 10.0kb upstream 11499 true Chr07: 13797552-13809050 Glycine max
Glyma.07G120200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 13797552-13807551 Glycine max
Glyma.07G120200 10.0kb downstream 10.0kb downstream 11499 true Chr07: 13807552-13819050 Glycine max
Glyma.07G120200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 13809051-13819050 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249846 5265 Fabidae Singleton cluster - no MSA
124040216 5270 Rosid View MSA
123743357 5271 Pentapetalae View MSA
122797200 5272 Eudicot View MSA
122049718 5273 Angiosperm View MSA
121345222 5274 Embryophyte View MSA
123426505 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057319 0.0 0.253806 Low High
cufflinks 0.00579218 0.0 0.0370804 Low Low
cufflinks 0.0116168 0.0 0.0608217 Low  
cufflinks 0.0105743 0.0 0.0558334 Low  
cufflinks 0.0166518 0.0 0.0828243 Low  
cufflinks 0.115695 0.0 0.482945 Low High
cufflinks 0.0384012 0.0 0.175465 Low  
cufflinks 0.00683114 0.0 0.0402384 Low  
cufflinks 0.00750471 0.0 0.0425337 Low  
cufflinks 0.069     Low  
cufflinks 0.099        
cufflinks 0.06     Low  
cufflinks 0.031     Low Low
cufflinks 0.074        
cufflinks 0.151        
cufflinks 0.211       High
cufflinks 0.009     Low Low
cufflinks 0.078     Low  
cufflinks 0.081     Low  
cufflinks 0.094     Low  
cufflinks 0.072        
cufflinks 0.107        
cufflinks 0.081     Low  
cufflinks 0.107        
cufflinks 0.126        
cufflinks 0.079        

0 Strain