Gene : Glyma.07G170000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  1700
Name:  ? Glyma.07G170000 Secondary Identifier:  ? PAC:30493786
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6829 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G170000 0.5kb upstream 0.5kb upstream 4973 true Chr07: 28743151-28748123 Glycine max
Glyma.07G170000 0.5kb upstream 0.5kb upstream 500 false Chr07: 28747624-28748123 Glycine max
Glyma.07G170000 0.5kb downstream 0.5kb downstream 4973 true Chr07: 28742651-28747623 Glycine max
Glyma.07G170000 0.5kb downstream 0.5kb downstream 500 false Chr07: 28742651-28743150 Glycine max
Glyma.07G170000 1.0kb upstream 1.0kb upstream 5473 true Chr07: 28743151-28748623 Glycine max
Glyma.07G170000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 28747624-28748623 Glycine max
Glyma.07G170000 1.0kb downstream 1.0kb downstream 5473 true Chr07: 28742151-28747623 Glycine max
Glyma.07G170000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 28742151-28743150 Glycine max
Glyma.07G170000 2.0kb upstream 2.0kb upstream 6473 true Chr07: 28743151-28749623 Glycine max
Glyma.07G170000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 28747624-28749623 Glycine max
Glyma.07G170000 2.0kb downstream 2.0kb downstream 6473 true Chr07: 28741151-28747623 Glycine max
Glyma.07G170000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 28741151-28743150 Glycine max
Glyma.07G170000 5.0kb upstream 5.0kb upstream 9473 true Chr07: 28743151-28752623 Glycine max
Glyma.07G170000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 28747624-28752623 Glycine max
Glyma.07G170000 5.0kb downstream 5.0kb downstream 9473 true Chr07: 28738151-28747623 Glycine max
Glyma.07G170000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 28738151-28743150 Glycine max
Glyma.07G170000 10.0kb upstream 10.0kb upstream 14473 true Chr07: 28743151-28757623 Glycine max
Glyma.07G170000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 28747624-28757623 Glycine max
Glyma.07G170000 10.0kb downstream 10.0kb downstream 14473 true Chr07: 28733151-28747623 Glycine max
Glyma.07G170000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 28733151-28743150 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307487 5265 Fabidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.36895 0.0 7.00165   Low
cufflinks 4.3987 0.0 16.5117   High
cufflinks 1.80461 0.0 8.39061    
cufflinks 2.63105 0.0 10.9289    
cufflinks 3.28946 0.0 12.8757    
cufflinks 1.76014 0.0 8.36439    
cufflinks 4.94334 0.0 17.2162   High
cufflinks 2.55808 0.0 10.7724    
cufflinks 2.35703 0.0 10.2196    
cufflinks 0.529        
cufflinks 0.077       Low
cufflinks 0.713        
cufflinks 1.154        
cufflinks 1.67       High
cufflinks 0.419        
cufflinks 0.749        
cufflinks 0.299        
cufflinks 0.962        
cufflinks 1.215        
cufflinks 0.704        
cufflinks 0.129       Low
cufflinks 0.711        
cufflinks 1.018        
cufflinks 0.095       Low
cufflinks 0.673        
cufflinks 0.294        

0 Strain